/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH03_15_S6_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH03_15_S6_L001_R2_001_val_2.fq.gz
Data processed at 18:28 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
7899
Pairs without alignments under any condition
26920
Pairs that did not map uniquely
5181
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
202738
Methylated C's in CpG context
5203
Methylated C's in CHG context
1037
Methylated C's in CHH context
36932
Methylated C's in Unknown context
364
Unmethylated C's in CpG context
22277
Unmethylated C's in CHG context
32441
Unmethylated C's in CHH context
104848
Unmethylated C's in Unknown context
581
Percentage methylation (CpG context)
18.9%
Percentage methylation (CHG context)
3.1%
Percentage methylation (CHH context)
26.0%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
3960
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
3939
original bottom strand
Deduplication
Alignments analysed
7899
Unique alignments
6334
Duplicates removed
1565
Duplicated alignments were found at 1153 different positions
