CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 28 121 18.79 149 2 41 130 23.98 171 3 23 121 15.97 144 4 21 116 15.33 137 5 10 102 8.93 112 6 18 141 11.32 159 7 24 120 16.67 144 8 21 131 13.82 152 9 19 104 15.45 123 10 17 139 10.90 156 11 23 124 15.65 147 12 20 126 13.70 146 13 8 123 6.11 131 14 18 115 13.53 133 15 20 143 12.27 163 16 18 119 13.14 137 17 13 119 9.85 132 18 14 141 9.03 155 19 21 123 14.58 144 20 17 136 11.11 153 21 14 123 10.22 137 22 20 113 15.04 133 23 13 144 8.28 157 24 16 121 11.68 137 25 8 132 5.71 140 26 11 126 8.03 137 27 18 117 13.33 135 28 22 137 13.84 159 29 13 113 10.32 126 30 18 133 11.92 151 31 26 134 16.25 160 32 10 115 8.00 125 33 15 123 10.87 138 34 19 110 14.73 129 35 12 117 9.30 129 36 6 104 5.45 110 37 16 118 11.94 134 38 12 107 10.08 119 39 11 108 9.24 119 40 17 126 11.89 143 41 11 98 10.09 109 42 7 112 5.88 119 43 16 120 11.76 136 44 23 110 17.29 133 45 17 113 13.08 130 46 10 108 8.47 118 47 15 98 13.27 113 48 16 109 12.80 125 49 13 104 11.11 117 50 20 97 17.09 117 51 9 115 7.26 124 52 12 99 10.81 111 53 10 101 9.01 111 54 19 99 16.10 118 55 12 83 12.63 95 56 8 84 8.70 92 57 14 83 14.43 97 58 15 100 13.04 115 59 15 83 15.31 98 60 16 99 13.91 115 61 8 71 10.13 79 62 13 70 15.66 83 63 5 91 5.21 96 64 15 94 13.76 109 65 13 79 14.13 92 66 20 79 20.20 99 67 10 74 11.90 84 68 13 72 15.29 85 69 5 60 7.69 65 70 13 81 13.83 94 71 11 61 15.28 72 72 7 70 9.09 77 73 11 61 15.28 72 74 11 65 14.47 76 75 14 57 19.72 71 76 11 55 16.67 66 77 20 57 25.97 77 78 11 67 14.10 78 79 9 50 15.25 59 80 9 57 13.64 66 81 5 35 12.50 40 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 54 136 28.42 190 2 22 155 12.43 177 3 12 143 7.74 155 4 9 146 5.81 155 5 15 161 8.52 176 6 21 157 11.80 178 7 12 173 6.49 185 8 13 153 7.83 166 9 8 126 5.97 134 10 4 154 2.53 158 11 9 150 5.66 159 12 7 143 4.67 150 13 5 157 3.09 162 14 12 156 7.14 168 15 6 159 3.64 165 16 3 141 2.08 144 17 5 155 3.12 160 18 6 166 3.49 172 19 2 170 1.16 172 20 4 153 2.55 157 21 6 154 3.75 160 22 2 176 1.12 178 23 11 153 6.71 164 24 6 162 3.57 168 25 5 144 3.36 149 26 4 166 2.35 170 27 10 146 6.41 156 28 4 131 2.96 135 29 4 160 2.44 164 30 12 147 7.55 159 31 6 149 3.87 155 32 9 170 5.03 179 33 5 173 2.81 178 34 6 155 3.73 161 35 7 154 4.35 161 36 5 138 3.50 143 37 2 141 1.40 143 38 8 122 6.15 130 39 10 157 5.99 167 40 5 127 3.79 132 41 5 147 3.29 152 42 6 127 4.51 133 43 6 119 4.80 125 44 2 132 1.49 134 45 4 134 2.90 138 46 3 109 2.68 112 47 8 140 5.41 148 48 4 131 2.96 135 49 5 123 3.91 128 50 1 131 0.76 132 51 5 125 3.85 130 52 2 124 1.59 126 53 5 121 3.97 126 54 5 125 3.85 130 55 4 119 3.25 123 56 5 97 4.90 102 57 5 115 4.17 120 58 4 116 3.33 120 59 5 122 3.94 127 60 4 108 3.57 112 61 3 96 3.03 99 62 3 94 3.09 97 63 5 116 4.13 121 64 7 86 7.53 93 65 11 99 10.00 110 66 1 101 0.98 102 67 3 88 3.30 91 68 2 89 2.20 91 69 6 100 5.66 106 70 4 99 3.88 103 71 6 92 6.12 98 72 5 77 6.10 82 73 5 71 6.58 76 74 8 83 8.79 91 75 4 71 5.33 75 76 6 84 6.67 90 77 6 81 6.90 87 78 5 78 6.02 83 79 11 64 14.67 75 80 2 64 3.03 66 81 1 53 1.85 54 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 448 481 48.22 929 2 439 487 47.41 926 3 431 481 47.26 912 4 430 506 45.94 936 5 391 540 42.00 931 6 461 524 46.80 985 7 398 512 43.74 910 8 445 479 48.16 924 9 438 448 49.44 886 10 479 518 48.04 997 11 447 528 45.85 975 12 471 501 48.46 972 13 493 513 49.01 1006 14 490 544 47.39 1034 15 453 491 47.99 944 16 484 539 47.31 1023 17 442 531 45.43 973 18 507 564 47.34 1071 19 465 542 46.18 1007 20 503 548 47.86 1051 21 465 526 46.92 991 22 500 563 47.04 1063 23 486 488 49.90 974 24 529 568 48.22 1097 25 466 488 48.85 954 26 544 513 51.47 1057 27 486 516 48.50 1002 28 505 511 49.70 1016 29 499 527 48.64 1026 30 514 550 48.31 1064 31 476 507 48.42 983 32 504 511 49.66 1015 33 453 508 47.14 961 34 490 494 49.80 984 35 471 501 48.46 972 36 471 490 49.01 961 37 478 460 50.96 938 38 465 500 48.19 965 39 451 470 48.97 921 40 455 474 48.98 929 41 456 478 48.82 934 42 444 503 46.88 947 43 437 445 49.55 882 44 446 445 50.06 891 45 405 410 49.69 815 46 414 470 46.83 884 47 401 413 49.26 814 48 411 466 46.86 877 49 386 400 49.11 786 50 401 420 48.84 821 51 348 421 45.25 769 52 398 408 49.38 806 53 353 420 45.67 773 54 408 380 51.78 788 55 340 392 46.45 732 56 366 379 49.13 745 57 305 381 44.46 686 58 355 327 52.05 682 59 320 336 48.78 656 60 324 358 47.51 682 61 302 345 46.68 647 62 316 380 45.40 696 63 256 322 44.29 578 64 305 329 48.11 634 65 247 316 43.87 563 66 283 309 47.80 592 67 231 293 44.08 524 68 277 304 47.68 581 69 225 304 42.53 529 70 253 276 47.83 529 71 220 257 46.12 477 72 252 279 47.46 531 73 198 258 43.42 456 74 248 279 47.06 527 75 176 235 42.82 411 76 230 246 48.32 476 77 192 249 43.54 441 78 207 225 47.92 432 79 177 217 44.92 394 80 176 230 43.35 406 81 130 141 47.97 271 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 12 51 19.05 63 2 15 55 21.43 70 3 46 55 45.54 101 4 3 49 5.77 52 5 10 56 15.15 66 6 4 43 8.51 47 7 1 46 2.13 47 8 6 44 12.00 50 9 5 49 9.26 54 10 5 49 9.26 54 11 5 46 9.80 51 12 3 59 4.84 62 13 3 41 6.82 44 14 5 46 9.80 51 15 5 45 10.00 50 16 1 42 2.33 43 17 5 54 8.47 59 18 6 28 17.65 34 19 2 42 4.55 44 20 3 41 6.82 44 21 3 34 8.11 37 22 1 31 3.12 32 23 6 30 16.67 36 24 1 26 3.70 27 25 1 23 4.17 24 26 3 25 10.71 28 27 1 25 3.85 26 28 1 25 3.85 26 29 4 27 12.90 31 30 2 19 9.52 21 31 4 21 16.00 25 32 1 27 3.57 28 33 1 23 4.17 24 34 1 20 4.76 21 35 1 28 3.45 29 36 2 17 10.53 19 37 4 19 17.39 23 38 0 18 0.00 18 39 1 22 4.35 23 40 1 18 5.26 19 41 1 13 7.14 14 42 6 18 25.00 24 43 1 11 8.33 12 44 0 18 0.00 18 45 2 13 13.33 15 46 3 11 21.43 14 47 2 11 15.38 13 48 2 15 11.76 17 49 1 16 5.88 17 50 0 7 0.00 7 51 0 13 0.00 13 52 1 14 6.67 15 53 0 10 0.00 10 54 1 9 10.00 10 55 2 11 15.38 13 56 1 12 7.69 13 57 0 9 0.00 9 58 0 10 0.00 10 59 0 6 0.00 6 60 1 9 10.00 10 61 0 5 0.00 5 62 1 8 11.11 9 63 0 13 0.00 13 64 1 10 9.09 11 65 1 10 9.09 11 66 1 9 10.00 10 67 3 5 37.50 8 68 0 7 0.00 7 69 4 8 33.33 12 70 2 6 25.00 8 71 0 7 0.00 7 72 1 7 12.50 8 73 3 4 42.86 7 74 2 7 22.22 9 75 0 8 0.00 8 76 0 8 0.00 8 77 0 5 0.00 5 78 0 3 0.00 3 79 1 3 25.00 4 80 0 3 0.00 3 81 0 1 0.00 1 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 12 64 15.79 76 2 10 70 12.50 80 3 15 90 14.29 105 4 4 116 3.33 120 5 4 47 7.84 51 6 4 77 4.94 81 7 6 58 9.38 64 8 21 83 20.19 104 9 4 51 7.27 55 10 3 52 5.45 55 11 1 60 1.64 61 12 0 53 0.00 53 13 2 50 3.85 52 14 2 53 3.64 55 15 1 58 1.69 59 16 2 46 4.17 48 17 3 48 5.88 51 18 2 42 4.55 44 19 2 47 4.08 49 20 2 50 3.85 52 21 0 35 0.00 35 22 1 35 2.78 36 23 0 45 0.00 45 24 5 39 11.36 44 25 1 38 2.56 39 26 2 29 6.45 31 27 1 31 3.12 32 28 0 30 0.00 30 29 0 30 0.00 30 30 0 23 0.00 23 31 0 29 0.00 29 32 1 30 3.23 31 33 1 27 3.57 28 34 2 21 8.70 23 35 1 30 3.23 31 36 0 28 0.00 28 37 1 32 3.03 33 38 0 13 0.00 13 39 1 23 4.17 24 40 0 25 0.00 25 41 1 28 3.45 29 42 0 19 0.00 19 43 1 20 4.76 21 44 1 22 4.35 23 45 0 23 0.00 23 46 1 17 5.56 18 47 0 18 0.00 18 48 1 28 3.45 29 49 2 21 8.70 23 50 1 10 9.09 11 51 1 16 5.88 17 52 0 18 0.00 18 53 0 20 0.00 20 54 0 12 0.00 12 55 1 21 4.55 22 56 1 14 6.67 15 57 0 12 0.00 12 58 1 9 10.00 10 59 0 17 0.00 17 60 0 14 0.00 14 61 1 9 10.00 10 62 1 8 11.11 9 63 0 14 0.00 14 64 0 13 0.00 13 65 1 18 5.26 19 66 0 16 0.00 16 67 0 6 0.00 6 68 1 13 7.14 14 69 0 9 0.00 9 70 2 6 25.00 8 71 1 5 16.67 6 72 1 8 11.11 9 73 1 3 25.00 4 74 1 8 11.11 9 75 1 8 11.11 9 76 1 6 14.29 7 77 1 5 16.67 6 78 3 5 37.50 8 79 1 4 20.00 5 80 0 6 0.00 6 81 0 1 0.00 1 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 199 233 46.06 432 2 114 245 31.75 359 3 185 235 44.05 420 4 108 224 32.53 332 5 187 216 46.40 403 6 110 207 34.70 317 7 181 207 46.65 388 8 104 176 37.14 280 9 181 183 49.73 364 10 149 175 45.99 324 11 173 166 51.03 339 12 136 167 44.88 303 13 168 194 46.41 362 14 128 183 41.16 311 15 157 148 51.48 305 16 119 148 44.57 267 17 154 157 49.52 311 18 97 155 38.49 252 19 139 137 50.36 276 20 100 135 42.55 235 21 139 134 50.92 273 22 87 142 37.99 229 23 131 127 50.78 258 24 82 140 36.94 222 25 126 158 44.37 284 26 84 133 38.71 217 27 120 119 50.21 239 28 69 123 35.94 192 29 113 125 47.48 238 30 67 117 36.41 184 31 111 110 50.23 221 32 74 96 43.53 170 33 101 99 50.50 200 34 67 92 42.14 159 35 94 92 50.54 186 36 73 97 42.94 170 37 96 96 50.00 192 38 65 74 46.76 139 39 102 85 54.55 187 40 62 79 43.97 141 41 89 86 50.86 175 42 56 91 38.10 147 43 92 75 55.09 167 44 52 70 42.62 122 45 86 61 58.50 147 46 50 74 40.32 124 47 90 66 57.69 156 48 48 63 43.24 111 49 85 61 58.22 146 50 54 67 44.63 121 51 79 69 53.38 148 52 59 52 53.15 111 53 75 58 56.39 133 54 51 59 46.36 110 55 71 60 54.20 131 56 42 52 44.68 94 57 69 56 55.20 125 58 41 59 41.00 100 59 67 57 54.03 124 60 41 55 42.71 96 61 65 62 51.18 127 62 40 34 54.05 74 63 58 49 54.21 107 64 45 32 58.44 77 65 58 40 59.18 98 66 43 42 50.59 85 67 51 36 58.62 87 68 40 32 55.56 72 69 57 42 57.58 99 70 46 31 59.74 77 71 50 35 58.82 85 72 39 32 54.93 71 73 54 34 61.36 88 74 37 38 49.33 75 75 44 31 58.67 75 76 31 33 48.44 64 77 46 35 56.79 81 78 28 39 41.79 67 79 40 38 51.28 78 80 24 29 45.28 53 81 24 7 77.42 31