/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH03_04_S5_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH03_04_S5_L001_R2_001_val_2.fq.gz
Data processed at 18:28 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
8490
Pairs without alignments under any condition
22932
Pairs that did not map uniquely
8578
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
205762
Methylated C's in CpG context
2904
Methylated C's in CHG context
1192
Methylated C's in CHH context
69174
Methylated C's in Unknown context
663
Unmethylated C's in CpG context
20728
Unmethylated C's in CHG context
26444
Unmethylated C's in CHH context
85320
Unmethylated C's in Unknown context
742
Percentage methylation (CpG context)
12.3%
Percentage methylation (CHG context)
4.3%
Percentage methylation (CHH context)
44.8%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
4274
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
4216
original bottom strand
Deduplication
Alignments analysed
8490
Unique alignments
7208
Duplicates removed
1282
Duplicated alignments were found at 977 different positions
