CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 194 84 69.78 278 2 227 82 73.46 309 3 167 57 74.55 224 4 179 87 67.29 266 5 172 90 65.65 262 6 165 86 65.74 251 7 173 87 66.54 260 8 166 90 64.84 256 9 200 88 69.44 288 10 171 79 68.40 250 11 174 97 64.21 271 12 203 95 68.12 298 13 186 89 67.64 275 14 181 83 68.56 264 15 177 88 66.79 265 16 173 79 68.65 252 17 166 82 66.94 248 18 194 84 69.78 278 19 183 67 73.20 250 20 158 73 68.40 231 21 215 75 74.14 290 22 201 96 67.68 297 23 174 94 64.93 268 24 196 109 64.26 305 25 196 64 75.38 260 26 176 60 74.58 236 27 190 71 72.80 261 28 160 107 59.93 267 29 197 71 73.51 268 30 184 78 70.23 262 31 183 73 71.48 256 32 183 84 68.54 267 33 191 79 70.74 270 34 156 74 67.83 230 35 186 77 70.72 263 36 196 79 71.27 275 37 177 68 72.24 245 38 147 61 70.67 208 39 146 72 66.97 218 40 174 68 71.90 242 41 149 64 69.95 213 42 153 79 65.95 232 43 162 70 69.83 232 44 121 88 57.89 209 45 134 60 69.07 194 46 150 60 71.43 210 47 140 69 66.99 209 48 145 62 70.05 207 49 126 69 64.62 195 50 131 66 66.50 197 51 127 58 68.65 185 52 121 70 63.35 191 53 140 65 68.29 205 54 120 52 69.77 172 55 121 47 72.02 168 56 116 67 63.39 183 57 123 58 67.96 181 58 105 55 65.62 160 59 95 56 62.91 151 60 127 51 71.35 178 61 105 51 67.31 156 62 107 51 67.72 158 63 109 51 68.12 160 64 88 51 63.31 139 65 104 47 68.87 151 66 81 51 61.36 132 67 70 43 61.95 113 68 83 34 70.94 117 69 79 34 69.91 113 70 79 54 59.40 133 71 85 35 70.83 120 72 74 27 73.27 101 73 85 46 64.89 131 74 84 38 68.85 122 75 73 33 68.87 106 76 51 46 52.58 97 77 72 41 63.72 113 78 69 25 73.40 94 79 64 30 68.09 94 80 64 27 70.33 91 81 41 21 66.13 62 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 51 329 13.42 380 2 12 307 3.76 319 3 23 316 6.78 339 4 13 341 3.67 354 5 14 330 4.07 344 6 20 311 6.04 331 7 15 308 4.64 323 8 7 324 2.11 331 9 11 312 3.41 323 10 17 340 4.76 357 11 11 362 2.95 373 12 16 342 4.47 358 13 6 346 1.70 352 14 13 369 3.40 382 15 10 330 2.94 340 16 15 328 4.37 343 17 6 358 1.65 364 18 11 357 2.99 368 19 10 301 3.22 311 20 8 368 2.13 376 21 7 340 2.02 347 22 6 352 1.68 358 23 12 358 3.24 370 24 10 352 2.76 362 25 12 333 3.48 345 26 9 354 2.48 363 27 11 335 3.18 346 28 12 325 3.56 337 29 6 347 1.70 353 30 9 332 2.64 341 31 9 297 2.94 306 32 6 329 1.79 335 33 12 332 3.49 344 34 8 307 2.54 315 35 7 312 2.19 319 36 6 306 1.92 312 37 5 325 1.52 330 38 14 317 4.23 331 39 6 324 1.82 330 40 7 279 2.45 286 41 6 275 2.14 281 42 10 303 3.19 313 43 8 286 2.72 294 44 11 266 3.97 277 45 7 282 2.42 289 46 6 278 2.11 284 47 5 262 1.87 267 48 9 252 3.45 261 49 5 240 2.04 245 50 6 245 2.39 251 51 8 262 2.96 270 52 10 250 3.85 260 53 10 241 3.98 251 54 5 235 2.08 240 55 4 215 1.83 219 56 6 211 2.76 217 57 6 219 2.67 225 58 5 214 2.28 219 59 4 194 2.02 198 60 8 209 3.69 217 61 2 209 0.95 211 62 2 189 1.05 191 63 4 181 2.16 185 64 9 176 4.86 185 65 5 191 2.55 196 66 6 159 3.64 165 67 2 161 1.23 163 68 5 162 2.99 167 69 11 177 5.85 188 70 3 160 1.84 163 71 2 128 1.54 130 72 5 154 3.14 159 73 5 140 3.45 145 74 4 138 2.82 142 75 5 133 3.62 138 76 3 121 2.42 124 77 4 130 2.99 134 78 1 101 0.98 102 79 3 131 2.24 134 80 6 106 5.36 112 81 6 80 6.98 86 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 307 841 26.74 1148 2 295 892 24.85 1187 3 288 861 25.07 1149 4 287 911 23.96 1198 5 298 910 24.67 1208 6 309 873 26.14 1182 7 260 866 23.09 1126 8 279 925 23.17 1204 9 293 862 25.37 1155 10 317 911 25.81 1228 11 273 949 22.34 1222 12 306 983 23.74 1289 13 281 983 22.23 1264 14 319 962 24.90 1281 15 273 987 21.67 1260 16 289 983 22.72 1272 17 291 970 23.08 1261 18 296 981 23.18 1277 19 305 1029 22.86 1334 20 316 1039 23.32 1355 21 308 984 23.84 1292 22 306 985 23.70 1291 23 297 959 23.65 1256 24 301 972 23.64 1273 25 281 978 22.32 1259 26 305 1024 22.95 1329 27 298 988 23.17 1286 28 300 1011 22.88 1311 29 277 987 21.91 1264 30 288 1000 22.36 1288 31 286 938 23.37 1224 32 288 942 23.41 1230 33 278 976 22.17 1254 34 301 928 24.49 1229 35 253 890 22.13 1143 36 273 882 23.64 1155 37 237 885 21.12 1122 38 264 850 23.70 1114 39 254 906 21.90 1160 40 245 870 21.97 1115 41 219 859 20.32 1078 42 254 863 22.74 1117 43 200 850 19.05 1050 44 256 820 23.79 1076 45 203 772 20.82 975 46 247 760 24.53 1007 47 189 759 19.94 948 48 230 761 23.21 991 49 183 732 20.00 915 50 190 765 19.90 955 51 189 667 22.08 856 52 197 680 22.46 877 53 159 670 19.18 829 54 194 666 22.56 860 55 172 676 20.28 848 56 184 682 21.25 866 57 155 602 20.48 757 58 177 633 21.85 810 59 152 609 19.97 761 60 164 581 22.01 745 61 145 559 20.60 704 62 160 569 21.95 729 63 127 510 19.94 637 64 145 566 20.39 711 65 110 483 18.55 593 66 139 487 22.20 626 67 113 517 17.94 630 68 124 507 19.65 631 69 106 467 18.50 573 70 114 467 19.62 581 71 108 475 18.52 583 72 110 452 19.57 562 73 101 437 18.77 538 74 99 400 19.84 499 75 82 419 16.37 501 76 101 404 20.00 505 77 81 394 17.05 475 78 89 382 18.90 471 79 78 353 18.10 431 80 78 354 18.06 432 81 52 241 17.75 293 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 34 28 54.84 62 2 72 28 72.00 100 3 76 28 73.08 104 4 49 32 60.49 81 5 38 34 52.78 72 6 48 33 59.26 81 7 40 26 60.61 66 8 39 18 68.42 57 9 52 28 65.00 80 10 44 34 56.41 78 11 51 24 68.00 75 12 36 30 54.55 66 13 44 28 61.11 72 14 45 22 67.16 67 15 42 21 66.67 63 16 34 15 69.39 49 17 33 23 58.93 56 18 30 24 55.56 54 19 29 18 61.70 47 20 22 18 55.00 40 21 34 10 77.27 44 22 36 20 64.29 56 23 34 17 66.67 51 24 30 15 66.67 45 25 25 13 65.79 38 26 25 12 67.57 37 27 33 17 66.00 50 28 20 6 76.92 26 29 14 20 41.18 34 30 24 10 70.59 34 31 16 15 51.61 31 32 24 8 75.00 32 33 19 5 79.17 24 34 20 11 64.52 31 35 14 15 48.28 29 36 18 7 72.00 25 37 17 8 68.00 25 38 23 2 92.00 25 39 19 13 59.38 32 40 15 7 68.18 22 41 15 7 68.18 22 42 9 5 64.29 14 43 12 2 85.71 14 44 13 6 68.42 19 45 16 6 72.73 22 46 16 7 69.57 23 47 7 5 58.33 12 48 13 5 72.22 18 49 12 8 60.00 20 50 10 0 100.00 10 51 10 3 76.92 13 52 12 4 75.00 16 53 6 4 60.00 10 54 7 6 53.85 13 55 11 6 64.71 17 56 4 7 36.36 11 57 8 1 88.89 9 58 12 6 66.67 18 59 4 6 40.00 10 60 11 5 68.75 16 61 3 8 27.27 11 62 5 4 55.56 9 63 6 4 60.00 10 64 6 1 85.71 7 65 6 5 54.55 11 66 8 6 57.14 14 67 4 3 57.14 7 68 9 1 90.00 10 69 5 1 83.33 6 70 6 4 60.00 10 71 3 3 50.00 6 72 4 2 66.67 6 73 4 2 66.67 6 74 4 4 50.00 8 75 7 3 70.00 10 76 3 2 60.00 5 77 4 3 57.14 7 78 1 3 25.00 4 79 4 3 57.14 7 80 9 0 100.00 9 81 2 0 100.00 2 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 8 110 6.78 118 2 6 106 5.36 112 3 16 117 12.03 133 4 3 132 2.22 135 5 3 94 3.09 97 6 4 104 3.70 108 7 3 114 2.56 117 8 8 119 6.30 127 9 2 81 2.41 83 10 3 89 3.26 92 11 0 88 0.00 88 12 2 111 1.77 113 13 2 85 2.30 87 14 1 95 1.04 96 15 3 102 2.86 105 16 1 82 1.20 83 17 2 70 2.78 72 18 0 64 0.00 64 19 1 70 1.41 71 20 0 59 0.00 59 21 2 58 3.33 60 22 0 67 0.00 67 23 1 59 1.67 60 24 0 62 0.00 62 25 1 48 2.04 49 26 1 60 1.64 61 27 1 55 1.79 56 28 0 64 0.00 64 29 1 54 1.82 55 30 1 45 2.17 46 31 1 44 2.22 45 32 0 40 0.00 40 33 2 50 3.85 52 34 0 27 0.00 27 35 1 52 1.89 53 36 0 38 0.00 38 37 1 39 2.50 40 38 0 19 0.00 19 39 0 41 0.00 41 40 1 33 2.94 34 41 2 26 7.14 28 42 0 32 0.00 32 43 1 30 3.23 31 44 0 33 0.00 33 45 0 38 0.00 38 46 1 22 4.35 23 47 0 27 0.00 27 48 0 24 0.00 24 49 0 22 0.00 22 50 0 21 0.00 21 51 1 27 3.57 28 52 0 23 0.00 23 53 0 20 0.00 20 54 0 16 0.00 16 55 0 18 0.00 18 56 0 17 0.00 17 57 0 24 0.00 24 58 0 18 0.00 18 59 0 21 0.00 21 60 1 22 4.35 23 61 0 10 0.00 10 62 1 17 5.56 18 63 0 11 0.00 11 64 0 14 0.00 14 65 1 10 9.09 11 66 0 21 0.00 21 67 2 13 13.33 15 68 0 13 0.00 13 69 0 9 0.00 9 70 0 4 0.00 4 71 0 15 0.00 15 72 0 8 0.00 8 73 0 9 0.00 9 74 1 6 14.29 7 75 0 6 0.00 6 76 0 12 0.00 12 77 1 9 10.00 10 78 0 9 0.00 9 79 0 4 0.00 4 80 0 7 0.00 7 81 0 8 0.00 8 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 83 367 18.44 450 2 48 347 12.15 395 3 100 331 23.20 431 4 42 343 10.91 385 5 82 279 22.71 361 6 51 279 15.45 330 7 82 281 22.59 363 8 30 316 8.67 346 9 84 282 22.95 366 10 49 271 15.31 320 11 66 268 19.76 334 12 48 258 15.69 306 13 67 280 19.31 347 14 40 267 13.03 307 15 66 254 20.62 320 16 41 278 12.85 319 17 62 243 20.33 305 18 43 235 15.47 278 19 58 213 21.40 271 20 34 211 13.88 245 21 67 209 24.28 276 22 31 174 15.12 205 23 52 210 19.85 262 24 32 179 15.17 211 25 56 189 22.86 245 26 29 153 15.93 182 27 53 166 24.20 219 28 30 164 15.46 194 29 46 145 24.08 191 30 30 140 17.65 170 31 53 145 26.77 198 32 32 150 17.58 182 33 47 116 28.83 163 34 29 128 18.47 157 35 38 131 22.49 169 36 25 129 16.23 154 37 34 139 19.65 173 38 24 104 18.75 128 39 39 104 27.27 143 40 25 93 21.19 118 41 47 89 34.56 136 42 25 100 20.00 125 43 38 87 30.40 125 44 31 90 25.62 121 45 34 92 26.98 126 46 27 86 23.89 113 47 32 77 29.36 109 48 28 77 26.67 105 49 35 74 32.11 109 50 22 72 23.40 94 51 35 77 31.25 112 52 32 86 27.12 118 53 27 67 28.72 94 54 30 55 35.29 85 55 34 72 32.08 106 56 28 76 26.92 104 57 26 64 28.89 90 58 30 56 34.88 86 59 30 56 34.88 86 60 26 53 32.91 79 61 31 63 32.98 94 62 31 49 38.75 80 63 31 47 39.74 78 64 30 59 33.71 89 65 23 43 34.85 66 66 26 46 36.11 72 67 23 46 33.33 69 68 25 53 32.05 78 69 21 37 36.21 58 70 27 39 40.91 66 71 21 41 33.87 62 72 23 47 32.86 70 73 20 36 35.71 56 74 25 34 42.37 59 75 17 33 34.00 50 76 26 32 44.83 58 77 21 37 36.21 58 78 20 34 37.04 54 79 24 30 44.44 54 80 16 34 32.00 50 81 10 14 41.67 24