/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH01_38_S4_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH01_38_S4_L001_R2_001_val_2.fq.gz
Data processed at 18:28 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
11078
Pairs without alignments under any condition
23464
Pairs that did not map uniquely
5458
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
297178
Methylated C's in CpG context
29290
Methylated C's in CHG context
1571
Methylated C's in CHH context
39695
Methylated C's in Unknown context
517
Unmethylated C's in CpG context
13207
Unmethylated C's in CHG context
55011
Unmethylated C's in CHH context
158404
Unmethylated C's in Unknown context
854
Percentage methylation (CpG context)
68.9%
Percentage methylation (CHG context)
2.8%
Percentage methylation (CHH context)
20.0%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5463
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5615
original bottom strand
Deduplication
Alignments analysed
11078
Unique alignments
8934
Duplicates removed
2144
Duplicated alignments were found at 1618 different positions
