CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 210 104 66.88 314 2 237 97 70.96 334 3 218 101 68.34 319 4 207 100 67.43 307 5 207 98 67.87 305 6 171 100 63.10 271 7 183 88 67.53 271 8 219 114 65.77 333 9 187 90 67.51 277 10 205 115 64.06 320 11 231 92 71.52 323 12 215 109 66.36 324 13 219 83 72.52 302 14 215 114 65.35 329 15 206 105 66.24 311 16 214 107 66.67 321 17 207 100 67.43 307 18 221 94 70.16 315 19 213 102 67.62 315 20 219 102 68.22 321 21 203 108 65.27 311 22 180 107 62.72 287 23 215 106 66.98 321 24 233 97 70.61 330 25 203 101 66.78 304 26 223 98 69.47 321 27 201 96 67.68 297 28 197 104 65.45 301 29 205 89 69.73 294 30 179 91 66.30 270 31 212 90 70.20 302 32 209 104 66.77 313 33 207 74 73.67 281 34 175 89 66.29 264 35 192 88 68.57 280 36 213 88 70.76 301 37 216 82 72.48 298 38 190 89 68.10 279 39 195 86 69.40 281 40 181 85 68.05 266 41 199 85 70.07 284 42 183 93 66.30 276 43 175 88 66.54 263 44 160 73 68.67 233 45 189 94 66.78 283 46 145 85 63.04 230 47 159 75 67.95 234 48 168 84 66.67 252 49 176 68 72.13 244 50 151 75 66.81 226 51 156 76 67.24 232 52 150 75 66.67 225 53 148 76 66.07 224 54 150 66 69.44 216 55 146 55 72.64 201 56 132 75 63.77 207 57 150 67 69.12 217 58 162 74 68.64 236 59 103 60 63.19 163 60 130 79 62.20 209 61 134 55 70.90 189 62 133 70 65.52 203 63 106 70 60.23 176 64 139 65 68.14 204 65 116 75 60.73 191 66 138 79 63.59 217 67 129 51 71.67 180 68 114 62 64.77 176 69 136 53 71.96 189 70 122 61 66.67 183 71 109 56 66.06 165 72 122 51 70.52 173 73 123 53 69.89 176 74 111 50 68.94 161 75 95 61 60.90 156 76 95 52 64.63 147 77 98 58 62.82 156 78 92 35 72.44 127 79 93 40 69.92 133 80 95 36 72.52 131 81 52 25 67.53 77 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 39 349 10.05 388 2 15 355 4.05 370 3 13 343 3.65 356 4 13 388 3.24 401 5 14 386 3.50 400 6 9 394 2.23 403 7 10 394 2.48 404 8 10 369 2.64 379 9 13 370 3.39 383 10 9 409 2.15 418 11 12 371 3.13 383 12 10 389 2.51 399 13 7 407 1.69 414 14 8 384 2.04 392 15 7 391 1.76 398 16 9 389 2.26 398 17 5 375 1.32 380 18 8 371 2.11 379 19 9 403 2.18 412 20 11 362 2.95 373 21 12 420 2.78 432 22 16 391 3.93 407 23 9 398 2.21 407 24 6 394 1.50 400 25 8 392 2.00 400 26 10 367 2.65 377 27 9 407 2.16 416 28 6 384 1.54 390 29 11 362 2.95 373 30 8 365 2.14 373 31 9 386 2.28 395 32 11 358 2.98 369 33 8 361 2.17 369 34 3 373 0.80 376 35 9 384 2.29 393 36 9 381 2.31 390 37 9 351 2.50 360 38 11 340 3.13 351 39 10 352 2.76 362 40 12 349 3.32 361 41 8 323 2.42 331 42 12 315 3.67 327 43 10 306 3.16 316 44 2 353 0.56 355 45 5 316 1.56 321 46 10 319 3.04 329 47 6 316 1.86 322 48 7 319 2.15 326 49 6 331 1.78 337 50 9 308 2.84 317 51 4 269 1.47 273 52 5 307 1.60 312 53 5 267 1.84 272 54 8 293 2.66 301 55 4 267 1.48 271 56 5 278 1.77 283 57 9 271 3.21 280 58 3 239 1.24 242 59 0 251 0.00 251 60 3 252 1.18 255 61 5 240 2.04 245 62 4 242 1.63 246 63 5 239 2.05 244 64 4 236 1.67 240 65 6 246 2.38 252 66 7 224 3.03 231 67 3 205 1.44 208 68 6 214 2.73 220 69 3 208 1.42 211 70 3 219 1.35 222 71 3 207 1.43 210 72 8 212 3.64 220 73 5 196 2.49 201 74 5 215 2.27 220 75 8 187 4.10 195 76 4 174 2.25 178 77 1 195 0.51 196 78 3 175 1.69 178 79 6 185 3.14 191 80 2 154 1.28 156 81 1 115 0.86 116 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 234 1046 18.28 1280 2 220 1051 17.31 1271 3 238 1036 18.68 1274 4 270 1043 20.56 1313 5 215 1076 16.65 1291 6 225 1037 17.83 1262 7 198 983 16.77 1181 8 233 1020 18.60 1253 9 230 996 18.76 1226 10 253 1016 19.94 1269 11 199 1059 15.82 1258 12 216 1063 16.89 1279 13 238 1105 17.72 1343 14 250 1081 18.78 1331 15 230 1070 17.69 1300 16 241 1074 18.33 1315 17 223 1111 16.72 1334 18 229 1102 17.21 1331 19 240 1050 18.60 1290 20 236 1107 17.57 1343 21 225 1081 17.23 1306 22 218 1090 16.67 1308 23 199 1082 15.53 1281 24 237 1140 17.21 1377 25 240 1123 17.61 1363 26 236 1127 17.31 1363 27 218 1148 15.96 1366 28 220 1120 16.42 1340 29 221 1130 16.36 1351 30 230 1124 16.99 1354 31 195 1081 15.28 1276 32 222 1021 17.86 1243 33 187 1079 14.77 1266 34 193 1008 16.07 1201 35 202 1056 16.06 1258 36 188 1023 15.52 1211 37 180 1024 14.95 1204 38 187 966 16.22 1153 39 165 1032 13.78 1197 40 178 1012 14.96 1190 41 167 1042 13.81 1209 42 161 1001 13.86 1162 43 162 997 13.98 1159 44 170 970 14.91 1140 45 158 918 14.68 1076 46 155 925 14.35 1080 47 153 981 13.49 1134 48 157 888 15.02 1045 49 149 933 13.77 1082 50 139 886 13.56 1025 51 138 840 14.11 978 52 155 839 15.59 994 53 141 886 13.73 1027 54 145 856 14.49 1001 55 133 839 13.68 972 56 117 831 12.34 948 57 134 776 14.73 910 58 128 738 14.78 866 59 130 802 13.95 932 60 117 746 13.56 863 61 124 735 14.44 859 62 106 730 12.68 836 63 113 729 13.42 842 64 98 677 12.65 775 65 105 707 12.93 812 66 98 677 12.65 775 67 97 689 12.34 786 68 111 680 14.03 791 69 100 648 13.37 748 70 76 628 10.80 704 71 90 631 12.48 721 72 79 587 11.86 666 73 93 600 13.42 693 74 82 602 11.99 684 75 76 579 11.60 655 76 71 618 10.30 689 77 83 564 12.83 647 78 60 535 10.08 595 79 72 510 12.37 582 80 54 498 9.78 552 81 45 349 11.42 394 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 80 42 65.57 122 2 65 49 57.02 114 3 91 37 71.09 128 4 69 49 58.47 118 5 79 36 68.70 115 6 67 31 68.37 98 7 60 37 61.86 97 8 55 29 65.48 84 9 62 39 61.39 101 10 64 30 68.09 94 11 65 26 71.43 91 12 54 37 59.34 91 13 77 35 68.75 112 14 53 39 57.61 92 15 60 27 68.97 87 16 58 36 61.70 94 17 60 37 61.86 97 18 49 38 56.32 87 19 59 17 77.63 76 20 65 22 74.71 87 21 55 29 65.48 84 22 55 19 74.32 74 23 54 30 64.29 84 24 46 22 67.65 68 25 41 23 64.06 64 26 49 22 69.01 71 27 36 27 57.14 63 28 47 23 67.14 70 29 39 10 79.59 49 30 41 14 74.55 55 31 47 23 67.14 70 32 33 18 64.71 51 33 31 22 58.49 53 34 40 28 58.82 68 35 51 22 69.86 73 36 30 15 66.67 45 37 30 11 73.17 41 38 33 13 71.74 46 39 24 11 68.57 35 40 41 8 83.67 49 41 26 10 72.22 36 42 36 15 70.59 51 43 31 10 75.61 41 44 24 15 61.54 39 45 30 14 68.18 44 46 25 9 73.53 34 47 21 13 61.76 34 48 24 7 77.42 31 49 19 10 65.52 29 50 21 8 72.41 29 51 23 21 52.27 44 52 18 15 54.55 33 53 26 7 78.79 33 54 20 9 68.97 29 55 19 7 73.08 26 56 14 8 63.64 22 57 23 13 63.89 36 58 18 5 78.26 23 59 17 10 62.96 27 60 11 13 45.83 24 61 26 5 83.87 31 62 17 6 73.91 23 63 17 7 70.83 24 64 15 5 75.00 20 65 17 4 80.95 21 66 19 1 95.00 20 67 11 11 50.00 22 68 12 9 57.14 21 69 10 4 71.43 14 70 15 5 75.00 20 71 18 6 75.00 24 72 12 5 70.59 17 73 9 7 56.25 16 74 10 5 66.67 15 75 8 3 72.73 11 76 9 7 56.25 16 77 4 8 33.33 12 78 12 4 75.00 16 79 6 7 46.15 13 80 7 2 77.78 9 81 8 2 80.00 10 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 2 168 1.18 170 2 5 148 3.27 153 3 8 148 5.13 156 4 0 168 0.00 168 5 1 125 0.79 126 6 4 150 2.60 154 7 4 131 2.96 135 8 3 144 2.04 147 9 2 127 1.55 129 10 2 142 1.39 144 11 3 128 2.29 131 12 4 135 2.88 139 13 1 141 0.70 142 14 3 129 2.27 132 15 3 108 2.70 111 16 3 124 2.36 127 17 4 99 3.88 103 18 1 109 0.91 110 19 2 99 1.98 101 20 0 112 0.00 112 21 1 110 0.90 111 22 0 89 0.00 89 23 1 92 1.08 93 24 1 107 0.93 108 25 0 96 0.00 96 26 1 83 1.19 84 27 0 95 0.00 95 28 0 86 0.00 86 29 2 79 2.47 81 30 1 93 1.06 94 31 1 68 1.45 69 32 1 72 1.37 73 33 0 73 0.00 73 34 0 71 0.00 71 35 1 84 1.18 85 36 1 53 1.85 54 37 3 60 4.76 63 38 0 68 0.00 68 39 0 72 0.00 72 40 1 52 1.89 53 41 0 70 0.00 70 42 0 53 0.00 53 43 1 53 1.85 54 44 1 49 2.00 50 45 0 55 0.00 55 46 0 51 0.00 51 47 1 38 2.56 39 48 0 52 0.00 52 49 0 44 0.00 44 50 0 38 0.00 38 51 1 42 2.33 43 52 1 43 2.27 44 53 1 33 2.94 34 54 2 41 4.65 43 55 1 46 2.13 47 56 0 36 0.00 36 57 0 38 0.00 38 58 0 44 0.00 44 59 1 30 3.23 31 60 0 29 0.00 29 61 0 35 0.00 35 62 1 36 2.70 37 63 1 39 2.50 40 64 0 32 0.00 32 65 0 23 0.00 23 66 0 28 0.00 28 67 0 28 0.00 28 68 1 21 4.55 22 69 1 22 4.35 23 70 1 27 3.57 28 71 4 21 16.00 25 72 0 15 0.00 15 73 0 27 0.00 27 74 0 23 0.00 23 75 0 19 0.00 19 76 0 18 0.00 18 77 0 17 0.00 17 78 1 16 5.88 17 79 3 21 12.50 24 80 0 19 0.00 19 81 0 11 0.00 11 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 55 517 9.62 572 2 53 466 10.21 519 3 59 498 10.59 557 4 45 494 8.35 539 5 47 440 9.65 487 6 42 476 8.11 518 7 37 482 7.13 519 8 40 465 7.92 505 9 45 418 9.72 463 10 52 400 11.50 452 11 37 393 8.60 430 12 35 405 7.95 440 13 45 389 10.37 434 14 36 379 8.67 415 15 38 358 9.60 396 16 31 347 8.20 378 17 36 378 8.70 414 18 23 324 6.63 347 19 35 333 9.51 368 20 26 304 7.88 330 21 34 309 9.91 343 22 27 297 8.33 324 23 26 336 7.18 362 24 20 292 6.41 312 25 30 301 9.06 331 26 24 294 7.55 318 27 29 252 10.32 281 28 26 264 8.97 290 29 18 250 6.72 268 30 19 260 6.81 279 31 24 245 8.92 269 32 24 238 9.16 262 33 30 234 11.36 264 34 17 227 6.97 244 35 28 222 11.20 250 36 15 221 6.36 236 37 24 201 10.67 225 38 15 211 6.64 226 39 27 179 13.11 206 40 13 213 5.75 226 41 25 167 13.02 192 42 11 178 5.82 189 43 24 196 10.91 220 44 13 169 7.14 182 45 22 169 11.52 191 46 9 166 5.14 175 47 19 137 12.18 156 48 10 159 5.92 169 49 24 151 13.71 175 50 15 138 9.80 153 51 23 137 14.38 160 52 14 146 8.75 160 53 18 139 11.46 157 54 14 123 10.22 137 55 21 131 13.82 152 56 13 125 9.42 138 57 21 122 14.69 143 58 10 111 8.26 121 59 21 128 14.09 149 60 10 108 8.47 118 61 13 107 10.83 120 62 13 97 11.82 110 63 18 96 15.79 114 64 12 109 9.92 121 65 18 110 14.06 128 66 10 96 9.43 106 67 18 117 13.33 135 68 8 91 8.08 99 69 15 85 15.00 100 70 8 83 8.79 91 71 20 82 19.61 102 72 14 88 13.73 102 73 21 98 17.65 119 74 7 87 7.45 94 75 17 71 19.32 88 76 8 74 9.76 82 77 18 77 18.95 95 78 11 67 14.10 78 79 12 71 14.46 83 80 6 52 10.34 58 81 9 27 25.00 36