/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH01_22_S3_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH01_22_S3_L001_R2_001_val_2.fq.gz
Data processed at 18:28 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
11356
Pairs without alignments under any condition
23683
Pairs that did not map uniquely
4961
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
333983
Methylated C's in CpG context
34384
Methylated C's in CHG context
1468
Methylated C's in CHH context
30589
Methylated C's in Unknown context
380
Unmethylated C's in CpG context
16321
Unmethylated C's in CHG context
64313
Unmethylated C's in CHH context
186908
Unmethylated C's in Unknown context
799
Percentage methylation (CpG context)
67.8%
Percentage methylation (CHG context)
2.2%
Percentage methylation (CHH context)
14.1%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5637
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5719
original bottom strand
Deduplication
Alignments analysed
11356
Unique alignments
9169
Duplicates removed
2187
Duplicated alignments were found at 1654 different positions
