CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 212 91 69.97 303 2 217 84 72.09 301 3 178 96 64.96 274 4 178 85 67.68 263 5 175 89 66.29 264 6 165 103 61.57 268 7 180 77 70.04 257 8 199 95 67.69 294 9 192 87 68.82 279 10 188 90 67.63 278 11 203 84 70.73 287 12 201 84 70.53 285 13 185 81 69.55 266 14 201 89 69.31 290 15 211 90 70.10 301 16 175 96 64.58 271 17 186 80 69.92 266 18 198 80 71.22 278 19 195 84 69.89 279 20 197 94 67.70 291 21 184 78 70.23 262 22 201 90 69.07 291 23 215 86 71.43 301 24 182 103 63.86 285 25 199 93 68.15 292 26 199 81 71.07 280 27 184 80 69.70 264 28 180 89 66.91 269 29 195 78 71.43 273 30 186 88 67.88 274 31 198 86 69.72 284 32 180 74 70.87 254 33 174 76 69.60 250 34 188 86 68.61 274 35 179 79 69.38 258 36 172 76 69.35 248 37 162 78 67.50 240 38 150 69 68.49 219 39 170 73 69.96 243 40 134 64 67.68 198 41 152 80 65.52 232 42 188 73 72.03 261 43 160 76 67.80 236 44 148 68 68.52 216 45 176 71 71.26 247 46 151 70 68.33 221 47 125 59 67.93 184 48 110 73 60.11 183 49 147 62 70.33 209 50 129 60 68.25 189 51 116 68 63.04 184 52 123 63 66.13 186 53 106 66 61.63 172 54 117 63 65.00 180 55 115 56 67.25 171 56 114 58 66.28 172 57 98 74 56.98 172 58 107 47 69.48 154 59 93 56 62.42 149 60 98 47 67.59 145 61 93 51 64.58 144 62 100 51 66.23 151 63 87 55 61.27 142 64 102 42 70.83 144 65 82 39 67.77 121 66 88 37 70.40 125 67 78 41 65.55 119 68 92 56 62.16 148 69 75 38 66.37 113 70 80 30 72.73 110 71 65 37 63.73 102 72 81 33 71.05 114 73 77 37 67.54 114 74 80 44 64.52 124 75 62 31 66.67 93 76 66 25 72.53 91 77 70 37 65.42 107 78 67 35 65.69 102 79 51 31 62.20 82 80 54 34 61.36 88 81 41 20 67.21 61 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 50 304 14.12 354 2 24 316 7.06 340 3 18 330 5.17 348 4 11 309 3.44 320 5 25 307 7.53 332 6 21 314 6.27 335 7 14 308 4.35 322 8 13 338 3.70 351 9 13 353 3.55 366 10 11 321 3.31 332 11 10 317 3.06 327 12 6 355 1.66 361 13 5 356 1.39 361 14 12 329 3.52 341 15 6 333 1.77 339 16 13 308 4.05 321 17 13 329 3.80 342 18 11 337 3.16 348 19 9 351 2.50 360 20 11 374 2.86 385 21 8 367 2.13 375 22 7 367 1.87 374 23 6 306 1.92 312 24 12 338 3.43 350 25 9 319 2.74 328 26 12 360 3.23 372 27 7 358 1.92 365 28 9 339 2.59 348 29 6 347 1.70 353 30 7 346 1.98 353 31 9 305 2.87 314 32 5 340 1.45 345 33 8 341 2.29 349 34 13 312 4.00 325 35 4 304 1.30 308 36 6 297 1.98 303 37 9 304 2.88 313 38 7 288 2.37 295 39 3 279 1.06 282 40 4 267 1.48 271 41 5 296 1.66 301 42 4 269 1.47 273 43 7 263 2.59 270 44 8 278 2.80 286 45 6 227 2.58 233 46 5 244 2.01 249 47 3 250 1.19 253 48 4 245 1.61 249 49 9 223 3.88 232 50 5 220 2.22 225 51 11 230 4.56 241 52 5 205 2.38 210 53 1 244 0.41 245 54 7 234 2.90 241 55 6 220 2.65 226 56 1 166 0.60 167 57 7 203 3.33 210 58 10 183 5.18 193 59 4 201 1.95 205 60 2 181 1.09 183 61 4 166 2.35 170 62 4 184 2.13 188 63 3 182 1.62 185 64 5 151 3.21 156 65 6 149 3.87 155 66 2 157 1.26 159 67 2 170 1.16 172 68 4 144 2.70 148 69 2 122 1.61 124 70 3 142 2.07 145 71 3 127 2.31 130 72 7 128 5.19 135 73 7 144 4.64 151 74 4 108 3.57 112 75 2 116 1.69 118 76 6 118 4.84 124 77 4 127 3.05 131 78 5 129 3.73 134 79 5 106 4.50 111 80 4 96 4.00 100 81 0 85 0.00 85 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 274 840 24.60 1114 2 267 910 22.68 1177 3 259 938 21.64 1197 4 252 937 21.19 1189 5 250 950 20.83 1200 6 256 980 20.71 1236 7 256 915 21.86 1171 8 239 953 20.05 1192 9 272 950 22.26 1222 10 256 936 21.48 1192 11 235 973 19.45 1208 12 246 950 20.57 1196 13 287 931 23.56 1218 14 248 994 19.97 1242 15 264 992 21.02 1256 16 255 1040 19.69 1295 17 242 992 19.61 1234 18 269 1047 20.44 1316 19 290 998 22.52 1288 20 252 1095 18.71 1347 21 268 987 21.35 1255 22 255 980 20.65 1235 23 260 1039 20.02 1299 24 259 1008 20.44 1267 25 268 1020 20.81 1288 26 255 1010 20.16 1265 27 259 1032 20.06 1291 28 269 1006 21.10 1275 29 273 1034 20.89 1307 30 265 964 21.56 1229 31 252 991 20.27 1243 32 254 951 21.08 1205 33 268 912 22.71 1180 34 231 948 19.59 1179 35 227 939 19.47 1166 36 204 934 17.93 1138 37 249 895 21.77 1144 38 220 875 20.09 1095 39 219 858 20.33 1077 40 204 896 18.55 1100 41 203 842 19.43 1045 42 192 807 19.22 999 43 196 793 19.82 989 44 186 781 19.23 967 45 184 785 18.99 969 46 178 733 19.54 911 47 181 767 19.09 948 48 174 757 18.69 931 49 185 699 20.93 884 50 147 668 18.04 815 51 139 702 16.53 841 52 176 685 20.44 861 53 158 660 19.32 818 54 158 620 20.31 778 55 141 614 18.68 755 56 138 631 17.95 769 57 124 612 16.85 736 58 150 598 20.05 748 59 130 579 18.34 709 60 140 557 20.09 697 61 121 570 17.51 691 62 128 535 19.31 663 63 120 553 17.83 673 64 114 535 17.57 649 65 83 515 13.88 598 66 113 515 17.99 628 67 92 463 16.58 555 68 107 469 18.58 576 69 98 462 17.50 560 70 92 425 17.79 517 71 80 437 15.47 517 72 91 444 17.01 535 73 83 416 16.63 499 74 83 400 17.18 483 75 78 385 16.85 463 76 77 371 17.19 448 77 71 378 15.81 449 78 72 341 17.43 413 79 68 327 17.22 395 80 67 275 19.59 342 81 45 223 16.79 268 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 40 36 52.63 76 2 41 28 59.42 69 3 68 36 65.38 104 4 36 37 49.32 73 5 40 25 61.54 65 6 36 23 61.02 59 7 36 20 64.29 56 8 51 14 78.46 65 9 37 28 56.92 65 10 37 30 55.22 67 11 43 14 75.44 57 12 27 26 50.94 53 13 35 17 67.31 52 14 35 20 63.64 55 15 33 20 62.26 53 16 33 15 68.75 48 17 31 24 56.36 55 18 22 12 64.71 34 19 28 17 62.22 45 20 29 10 74.36 39 21 25 10 71.43 35 22 22 17 56.41 39 23 25 18 58.14 43 24 21 15 58.33 36 25 16 15 51.61 31 26 28 13 68.29 41 27 27 11 71.05 38 28 21 11 65.62 32 29 17 8 68.00 25 30 17 14 54.84 31 31 21 11 65.62 32 32 13 14 48.15 27 33 11 12 47.83 23 34 12 9 57.14 21 35 13 10 56.52 23 36 17 10 62.96 27 37 8 6 57.14 14 38 8 8 50.00 16 39 14 8 63.64 22 40 11 6 64.71 17 41 8 2 80.00 10 42 11 6 64.71 17 43 7 4 63.64 11 44 8 4 66.67 12 45 12 8 60.00 20 46 11 5 68.75 16 47 14 8 63.64 22 48 9 6 60.00 15 49 7 5 58.33 12 50 9 3 75.00 12 51 7 6 53.85 13 52 3 8 27.27 11 53 2 4 33.33 6 54 8 2 80.00 10 55 6 3 66.67 9 56 3 8 27.27 11 57 6 2 75.00 8 58 2 5 28.57 7 59 8 5 61.54 13 60 7 3 70.00 10 61 1 5 16.67 6 62 7 4 63.64 11 63 4 2 66.67 6 64 5 2 71.43 7 65 4 4 50.00 8 66 3 4 42.86 7 67 2 2 50.00 4 68 2 2 50.00 4 69 3 2 60.00 5 70 6 3 66.67 9 71 5 3 62.50 8 72 2 3 40.00 5 73 5 0 100.00 5 74 5 5 50.00 10 75 1 1 50.00 2 76 5 1 83.33 6 77 3 1 75.00 4 78 2 1 66.67 3 79 4 3 57.14 7 80 2 0 100.00 2 81 0 0 0 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 5 92 5.15 97 2 2 89 2.20 91 3 16 95 14.41 111 4 2 127 1.55 129 5 2 78 2.50 80 6 1 93 1.06 94 7 2 70 2.78 72 8 1 92 1.08 93 9 3 93 3.12 96 10 1 77 1.28 78 11 2 83 2.35 85 12 3 77 3.75 80 13 0 72 0.00 72 14 1 68 1.45 69 15 1 59 1.67 60 16 0 52 0.00 52 17 5 70 6.67 75 18 1 47 2.08 48 19 2 52 3.70 54 20 0 50 0.00 50 21 0 60 0.00 60 22 1 34 2.86 35 23 0 39 0.00 39 24 2 42 4.55 44 25 1 41 2.38 42 26 0 37 0.00 37 27 0 37 0.00 37 28 0 31 0.00 31 29 2 36 5.26 38 30 2 36 5.26 38 31 0 35 0.00 35 32 1 33 2.94 34 33 3 42 6.67 45 34 0 24 0.00 24 35 0 26 0.00 26 36 0 41 0.00 41 37 1 25 3.85 26 38 0 30 0.00 30 39 0 24 0.00 24 40 0 24 0.00 24 41 1 25 3.85 26 42 0 24 0.00 24 43 0 22 0.00 22 44 0 20 0.00 20 45 0 24 0.00 24 46 0 23 0.00 23 47 0 15 0.00 15 48 0 19 0.00 19 49 0 19 0.00 19 50 1 17 5.56 18 51 0 16 0.00 16 52 0 19 0.00 19 53 0 11 0.00 11 54 0 16 0.00 16 55 0 13 0.00 13 56 0 13 0.00 13 57 0 15 0.00 15 58 0 13 0.00 13 59 0 13 0.00 13 60 0 11 0.00 11 61 1 11 8.33 12 62 0 6 0.00 6 63 0 10 0.00 10 64 0 14 0.00 14 65 0 10 0.00 10 66 0 11 0.00 11 67 0 8 0.00 8 68 0 8 0.00 8 69 1 7 12.50 8 70 0 4 0.00 4 71 0 6 0.00 6 72 0 7 0.00 7 73 0 4 0.00 4 74 0 10 0.00 10 75 0 8 0.00 8 76 2 5 28.57 7 77 0 5 0.00 5 78 1 9 10.00 10 79 0 3 0.00 3 80 1 7 12.50 8 81 0 1 0.00 1 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 90 315 22.22 405 2 42 344 10.88 386 3 89 279 24.18 368 4 31 269 10.33 300 5 75 227 24.83 302 6 32 250 11.35 282 7 79 227 25.82 306 8 39 232 14.39 271 9 78 241 24.45 319 10 34 229 12.93 263 11 71 231 23.51 302 12 35 262 11.78 297 13 72 234 23.53 306 14 30 241 11.07 271 15 61 234 20.68 295 16 28 217 11.43 245 17 52 212 19.70 264 18 24 177 11.94 201 19 48 162 22.86 210 20 25 164 13.23 189 21 50 172 22.52 222 22 21 172 10.88 193 23 44 152 22.45 196 24 22 143 13.33 165 25 43 158 21.39 201 26 20 138 12.66 158 27 44 143 23.53 187 28 17 149 10.24 166 29 35 127 21.60 162 30 16 130 10.96 146 31 34 121 21.94 155 32 14 120 10.45 134 33 36 125 22.36 161 34 19 116 14.07 135 35 32 115 21.77 147 36 15 98 13.27 113 37 34 97 25.95 131 38 19 98 16.24 117 39 31 87 26.27 118 40 11 97 10.19 108 41 31 89 25.83 120 42 17 78 17.89 95 43 28 79 26.17 107 44 13 80 13.98 93 45 28 75 27.18 103 46 12 73 14.12 85 47 22 68 24.44 90 48 15 61 19.74 76 49 21 56 27.27 77 50 14 52 21.21 66 51 19 64 22.89 83 52 20 52 27.78 72 53 23 62 27.06 85 54 17 62 21.52 79 55 17 52 24.64 69 56 14 60 18.92 74 57 22 48 31.43 70 58 17 51 25.00 68 59 18 53 25.35 71 60 13 53 19.70 66 61 17 53 24.29 70 62 14 38 26.92 52 63 18 37 32.73 55 64 15 39 27.78 54 65 13 42 23.64 55 66 13 51 20.31 64 67 18 43 29.51 61 68 10 37 21.28 47 69 19 41 31.67 60 70 6 34 15.00 40 71 15 37 28.85 52 72 11 37 22.92 48 73 17 40 29.82 57 74 12 35 25.53 47 75 13 30 30.23 43 76 8 32 20.00 40 77 13 34 27.66 47 78 9 20 31.03 29 79 12 29 29.27 41 80 7 20 25.93 27 81 6 9 40.00 15