/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH01_14_S2_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH01_14_S2_L001_R2_001_val_2.fq.gz
Data processed at 18:28 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
11031
Pairs without alignments under any condition
23040
Pairs that did not map uniquely
5929
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
294198
Methylated C's in CpG context
30190
Methylated C's in CHG context
1500
Methylated C's in CHH context
35786
Methylated C's in Unknown context
427
Unmethylated C's in CpG context
14240
Unmethylated C's in CHG context
53223
Unmethylated C's in CHH context
159259
Unmethylated C's in Unknown context
902
Percentage methylation (CpG context)
67.9%
Percentage methylation (CHG context)
2.7%
Percentage methylation (CHH context)
18.3%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5408
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5623
original bottom strand
Deduplication
Alignments analysed
11031
Unique alignments
8719
Duplicates removed
2312
Duplicated alignments were found at 1629 different positions
