CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 244 78 75.78 322 2 264 76 77.65 340 3 259 83 75.73 342 4 224 68 76.71 292 5 265 88 75.07 353 6 232 98 70.30 330 7 216 79 73.22 295 8 266 97 73.28 363 9 256 83 75.52 339 10 249 84 74.77 333 11 271 85 76.12 356 12 276 95 74.39 371 13 266 92 74.30 358 14 260 95 73.24 355 15 264 84 75.86 348 16 270 82 76.70 352 17 279 87 76.23 366 18 248 83 74.92 331 19 254 100 71.75 354 20 239 86 73.54 325 21 291 92 75.98 383 22 258 90 74.14 348 23 260 99 72.42 359 24 278 99 73.74 377 25 254 81 75.82 335 26 264 65 80.24 329 27 262 84 75.72 346 28 229 77 74.84 306 29 253 100 71.67 353 30 237 87 73.15 324 31 254 80 76.05 334 32 278 87 76.16 365 33 223 87 71.94 310 34 260 81 76.25 341 35 235 84 73.67 319 36 248 79 75.84 327 37 267 71 78.99 338 38 230 82 73.72 312 39 265 92 74.23 357 40 240 65 78.69 305 41 233 65 78.19 298 42 233 92 71.69 325 43 215 72 74.91 287 44 234 80 74.52 314 45 211 53 79.92 264 46 210 69 75.27 279 47 210 84 71.43 294 48 212 75 73.87 287 49 209 69 75.18 278 50 195 59 76.77 254 51 193 50 79.42 243 52 198 49 80.16 247 53 179 58 75.53 237 54 186 70 72.66 256 55 185 54 77.41 239 56 195 68 74.14 263 57 189 51 78.75 240 58 183 62 74.69 245 59 159 58 73.27 217 60 180 61 74.69 241 61 167 58 74.22 225 62 167 43 79.52 210 63 170 43 79.81 213 64 169 53 76.13 222 65 158 44 78.22 202 66 152 42 78.35 194 67 135 49 73.37 184 68 127 55 69.78 182 69 143 48 74.87 191 70 144 45 76.19 189 71 114 47 70.81 161 72 116 57 67.05 173 73 119 39 75.32 158 74 143 39 78.57 182 75 124 54 69.66 178 76 123 41 75.00 164 77 112 51 68.71 163 78 116 38 75.32 154 79 107 27 79.85 134 80 100 30 76.92 130 81 78 27 74.29 105 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 42 393 9.66 435 2 21 386 5.16 407 3 12 365 3.18 377 4 23 402 5.41 425 5 9 423 2.08 432 6 25 381 6.16 406 7 10 379 2.57 389 8 10 447 2.19 457 9 12 398 2.93 410 10 18 395 4.36 413 11 13 398 3.16 411 12 5 412 1.20 417 13 9 394 2.23 403 14 10 410 2.38 420 15 16 413 3.73 429 16 5 412 1.20 417 17 16 419 3.68 435 18 8 426 1.84 434 19 14 405 3.34 419 20 9 415 2.12 424 21 14 432 3.14 446 22 8 421 1.86 429 23 8 398 1.97 406 24 7 410 1.68 417 25 11 402 2.66 413 26 6 395 1.50 401 27 16 378 4.06 394 28 10 416 2.35 426 29 16 417 3.70 433 30 12 402 2.90 414 31 10 376 2.59 386 32 11 370 2.89 381 33 8 393 2.00 401 34 3 431 0.69 434 35 13 373 3.37 386 36 11 384 2.78 395 37 10 384 2.54 394 38 9 336 2.61 345 39 12 370 3.14 382 40 13 392 3.21 405 41 7 384 1.79 391 42 8 356 2.20 364 43 5 339 1.45 344 44 13 313 3.99 326 45 7 294 2.33 301 46 8 319 2.45 327 47 3 324 0.92 327 48 8 304 2.56 312 49 6 274 2.14 280 50 9 317 2.76 326 51 9 336 2.61 345 52 8 322 2.42 330 53 1 297 0.34 298 54 9 271 3.21 280 55 6 289 2.03 295 56 5 269 1.82 274 57 6 290 2.03 296 58 8 259 3.00 267 59 6 274 2.14 280 60 8 266 2.92 274 61 3 226 1.31 229 62 2 263 0.75 265 63 6 230 2.54 236 64 5 248 1.98 253 65 3 243 1.22 246 66 2 216 0.92 218 67 3 241 1.23 244 68 6 232 2.52 238 69 6 233 2.51 239 70 3 203 1.46 206 71 7 207 3.27 214 72 5 184 2.65 189 73 2 223 0.89 225 74 1 195 0.51 196 75 3 208 1.42 211 76 2 183 1.08 185 77 8 188 4.08 196 78 0 170 0.00 170 79 3 156 1.89 159 80 3 180 1.64 183 81 4 116 3.33 120 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 251 1005 19.98 1256 2 216 1038 17.22 1254 3 197 1033 16.02 1230 4 213 1002 17.53 1215 5 203 1022 16.57 1225 6 225 990 18.52 1215 7 214 1029 17.22 1243 8 207 1013 16.97 1220 9 215 1065 16.80 1280 10 216 1013 17.58 1229 11 200 1032 16.23 1232 12 233 958 19.56 1191 13 225 1065 17.44 1290 14 239 1027 18.88 1266 15 217 1045 17.19 1262 16 226 1042 17.82 1268 17 216 1091 16.53 1307 18 213 1097 16.26 1310 19 207 1080 16.08 1287 20 226 1133 16.63 1359 21 194 1093 15.07 1287 22 216 1106 16.34 1322 23 250 1026 19.59 1276 24 230 1074 17.64 1304 25 205 1111 15.58 1316 26 199 1135 14.92 1334 27 218 1094 16.62 1312 28 199 1115 15.14 1314 29 218 1068 16.95 1286 30 206 1025 16.73 1231 31 207 1051 16.45 1258 32 200 984 16.89 1184 33 191 1022 15.75 1213 34 214 1033 17.16 1247 35 162 989 14.07 1151 36 178 1002 15.08 1180 37 157 1031 13.22 1188 38 162 994 14.01 1156 39 173 977 15.04 1150 40 165 953 14.76 1118 41 170 948 15.21 1118 42 158 951 14.25 1109 43 136 891 13.24 1027 44 168 931 15.29 1099 45 138 909 13.18 1047 46 143 929 13.34 1072 47 146 876 14.29 1022 48 136 894 13.20 1030 49 137 914 13.04 1051 50 134 884 13.16 1018 51 122 879 12.19 1001 52 129 842 13.29 971 53 122 853 12.51 975 54 126 804 13.55 930 55 122 774 13.62 896 56 113 759 12.96 872 57 96 796 10.76 892 58 113 812 12.22 925 59 111 728 13.23 839 60 104 734 12.41 838 61 103 710 12.67 813 62 89 713 11.10 802 63 76 707 9.71 783 64 85 689 10.98 774 65 89 707 11.18 796 66 99 682 12.68 781 67 88 640 12.09 728 68 86 656 11.59 742 69 73 615 10.61 688 70 70 613 10.25 683 71 72 592 10.84 664 72 72 603 10.67 675 73 66 579 10.23 645 74 87 582 13.00 669 75 63 566 10.02 629 76 62 557 10.02 619 77 53 524 9.19 577 78 60 528 10.20 588 79 59 490 10.75 549 80 67 456 12.81 523 81 28 361 7.20 389 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 60 40 60.00 100 2 84 32 72.41 116 3 90 37 70.87 127 4 78 41 65.55 119 5 78 35 69.03 113 6 74 32 69.81 106 7 90 30 75.00 120 8 88 33 72.73 121 9 72 41 63.72 113 10 72 33 68.57 105 11 80 39 67.23 119 12 71 31 69.61 102 13 93 30 75.61 123 14 65 31 67.71 96 15 58 30 65.91 88 16 72 24 75.00 96 17 53 33 61.63 86 18 71 22 76.34 93 19 60 26 69.77 86 20 52 34 60.47 86 21 52 24 68.42 76 22 52 25 67.53 77 23 50 19 72.46 69 24 47 19 71.21 66 25 69 21 76.67 90 26 55 20 73.33 75 27 43 25 63.24 68 28 66 16 80.49 82 29 57 22 72.15 79 30 41 14 74.55 55 31 56 21 72.73 77 32 40 21 65.57 61 33 51 19 72.86 70 34 35 18 66.04 53 35 36 14 72.00 50 36 40 17 70.18 57 37 35 13 72.92 48 38 36 14 72.00 50 39 28 13 68.29 41 40 40 7 85.11 47 41 40 15 72.73 55 42 27 10 72.97 37 43 30 9 76.92 39 44 33 13 71.74 46 45 20 9 68.97 29 46 22 9 70.97 31 47 26 11 70.27 37 48 29 11 72.50 40 49 26 10 72.22 36 50 16 9 64.00 25 51 20 10 66.67 30 52 23 7 76.67 30 53 17 9 65.38 26 54 29 4 87.88 33 55 19 9 67.86 28 56 15 6 71.43 21 57 15 4 78.95 19 58 19 6 76.00 25 59 23 9 71.88 32 60 22 8 73.33 30 61 19 10 65.52 29 62 12 6 66.67 18 63 24 10 70.59 34 64 18 5 78.26 23 65 13 5 72.22 18 66 21 4 84.00 25 67 14 4 77.78 18 68 18 6 75.00 24 69 10 5 66.67 15 70 14 4 77.78 18 71 14 4 77.78 18 72 20 5 80.00 25 73 8 3 72.73 11 74 13 8 61.90 21 75 11 3 78.57 14 76 10 6 62.50 16 77 10 2 83.33 12 78 12 4 75.00 16 79 13 3 81.25 16 80 7 2 77.78 9 81 8 1 88.89 9 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 6 171 3.39 177 2 9 154 5.52 163 3 9 149 5.70 158 4 0 158 0.00 158 5 3 152 1.94 155 6 2 129 1.53 131 7 4 120 3.23 124 8 4 171 2.29 175 9 1 137 0.72 138 10 4 130 2.99 134 11 3 132 2.22 135 12 3 125 2.34 128 13 1 142 0.70 143 14 5 134 3.60 139 15 2 136 1.45 138 16 3 121 2.42 124 17 2 129 1.53 131 18 3 115 2.54 118 19 4 112 3.45 116 20 1 101 0.98 102 21 0 101 0.00 101 22 3 77 3.75 80 23 1 105 0.94 106 24 2 99 1.98 101 25 2 91 2.15 93 26 2 98 2.00 100 27 1 87 1.14 88 28 1 83 1.19 84 29 1 100 0.99 101 30 3 74 3.90 77 31 3 66 4.35 69 32 0 85 0.00 85 33 1 80 1.23 81 34 3 62 4.62 65 35 2 61 3.17 63 36 0 67 0.00 67 37 1 76 1.30 77 38 1 54 1.82 55 39 1 63 1.56 64 40 1 51 1.92 52 41 0 40 0.00 40 42 0 56 0.00 56 43 0 39 0.00 39 44 0 48 0.00 48 45 2 61 3.17 63 46 0 49 0.00 49 47 0 37 0.00 37 48 0 50 0.00 50 49 0 41 0.00 41 50 1 50 1.96 51 51 0 39 0.00 39 52 1 40 2.44 41 53 0 34 0.00 34 54 1 38 2.56 39 55 0 34 0.00 34 56 1 39 2.50 40 57 0 41 0.00 41 58 0 35 0.00 35 59 0 30 0.00 30 60 0 34 0.00 34 61 1 41 2.38 42 62 0 38 0.00 38 63 1 28 3.45 29 64 0 30 0.00 30 65 0 22 0.00 22 66 0 30 0.00 30 67 1 18 5.26 19 68 0 31 0.00 31 69 0 33 0.00 33 70 1 23 4.17 24 71 1 22 4.35 23 72 1 27 3.57 28 73 0 16 0.00 16 74 1 18 5.26 19 75 0 19 0.00 19 76 0 18 0.00 18 77 0 21 0.00 21 78 0 12 0.00 12 79 0 14 0.00 14 80 0 18 0.00 18 81 0 11 0.00 11 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 64 475 11.87 539 2 31 477 6.10 508 3 61 486 11.15 547 4 34 422 7.46 456 5 50 421 10.62 471 6 29 396 6.82 425 7 55 403 12.01 458 8 37 424 8.03 461 9 46 377 10.87 423 10 33 395 7.71 428 11 48 346 12.18 394 12 25 368 6.36 393 13 45 375 10.71 420 14 27 345 7.26 372 15 41 368 10.02 409 16 32 369 7.98 401 17 32 318 9.14 350 18 28 335 7.71 363 19 38 313 10.83 351 20 34 298 10.24 332 21 36 297 10.81 333 22 25 293 7.86 318 23 26 272 8.72 298 24 30 281 9.65 311 25 26 261 9.06 287 26 32 236 11.94 268 27 32 242 11.68 274 28 25 235 9.62 260 29 26 246 9.56 272 30 27 248 9.82 275 31 35 246 12.46 281 32 21 204 9.33 225 33 28 215 11.52 243 34 19 233 7.54 252 35 30 185 13.95 215 36 27 189 12.50 216 37 27 205 11.64 232 38 18 180 9.09 198 39 28 203 12.12 231 40 17 191 8.17 208 41 18 172 9.47 190 42 15 168 8.20 183 43 23 164 12.30 187 44 12 161 6.94 173 45 26 159 14.05 185 46 14 171 7.57 185 47 19 141 11.88 160 48 14 149 8.59 163 49 21 163 11.41 184 50 13 126 9.35 139 51 23 115 16.67 138 52 13 120 9.77 133 53 16 111 12.60 127 54 14 109 11.38 123 55 17 107 13.71 124 56 17 116 12.78 133 57 16 109 12.80 125 58 15 112 11.81 127 59 14 109 11.38 123 60 11 97 10.19 108 61 17 97 14.91 114 62 8 92 8.00 100 63 15 95 13.64 110 64 13 88 12.87 101 65 11 82 11.83 93 66 9 93 8.82 102 67 14 80 14.89 94 68 10 84 10.64 94 69 16 79 16.84 95 70 8 79 9.20 87 71 10 82 10.87 92 72 7 69 9.21 76 73 11 66 14.29 77 74 10 64 13.51 74 75 16 63 20.25 79 76 9 57 13.64 66 77 9 57 13.64 66 78 14 52 21.21 66 79 9 61 12.86 70 80 9 48 15.79 57 81 10 18 35.71 28