/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH01_06_S1_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH01_06_S1_L001_R2_001_val_2.fq.gz
Data processed at 18:28 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
11258
Pairs without alignments under any condition
24154
Pairs that did not map uniquely
4588
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
335869
Methylated C's in CpG context
42201
Methylated C's in CHG context
1808
Methylated C's in CHH context
28990
Methylated C's in Unknown context
320
Unmethylated C's in CpG context
14292
Unmethylated C's in CHG context
66833
Unmethylated C's in CHH context
181745
Unmethylated C's in Unknown context
751
Percentage methylation (CpG context)
74.7%
Percentage methylation (CHG context)
2.6%
Percentage methylation (CHH context)
13.8%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5622
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5636
original bottom strand
Deduplication
Alignments analysed
11258
Unique alignments
9085
Duplicates removed
2173
Duplicated alignments were found at 1632 different positions
