File	Total Reads	Aligned Reads	Unaligned Reads	Ambiguously Aligned Reads	No Genomic Sequence	Duplicate Reads (removed)	Unique Reads (remaining)	Total Cs	Methylated CpGs	Unmethylated CpGs	Methylated chgs	Unmethylated chgs	Methylated CHHs	Unmethylated CHHs
CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	11805	23284	4911	0	2285	9520	170858	21652	7081	860	33856	14743	92666
CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	11548	22152	6300	0	2446	9102	136522	13983	6349	761	24543	17512	73374
CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	11862	22771	5367	0	2289	9573	171369	17817	8137	802	32706	16011	95896
CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	11572	22692	5736	0	2240	9332	144393	14129	6281	865	26198	20560	76360
CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	8475	22031	9494	0	1247	7228	103908	1499	9573	738	12513	38465	41120
CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	7978	25966	6056	0	1573	6405	102885	2746	10417	547	15940	20652	52583
CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	11375	24481	4144	0	2402	8973	174348	22001	7701	941	35283	13365	95057
CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	10452	21322	8226	0	1687	8765	129943	7713	6771	896	19227	38267	57069
CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	7392	26796	5812	0	1486	5906	109463	1150	11937	478	16737	17607	61554
CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	11871	22766	5363	0	2731	9140	155759	13950	7182	1012	28767	25631	79217
CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	12588	21090	6322	0	2437	10151	157879	18130	6681	1029	30022	23490	78527
CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	11241	23687	5072	0	2318	8923	159318	16744	8300	912	29745	18743	84874
CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	7401	27194	5405	0	1574	5827	100121	1079	10663	522	15566	16038	56253
CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	8617	24320	7063	0	1598	7019	113556	1029	11246	490	16555	17040	67196
CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	11594	21966	6440	0	2226	9368	137756	13275	6166	960	23287	24621	69447
CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	12161	21599	6240	0	2288	9873	183761	10389	9990	919	29628	25891	106944
CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	10820	24913	4267	0	2155	8665	150440	15884	6733	1059	29149	15581	82034
CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	11719	23157	5124	0	2043	9676	161633	17616	6537	1021	31004	16826	88629
CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	9907	22552	7541	0	1638	8269	125903	4529	8891	861	18073	38101	55448
CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	11468	22715	5817	0	2207	9261	139697	12950	6215	853	25122	19246	75311