CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 196 94 67.59 290 2 198 104 65.56 302 3 164 80 67.21 244 4 201 92 68.60 293 5 164 89 64.82 253 6 160 87 64.78 247 7 160 84 65.57 244 8 161 83 65.98 244 9 190 83 69.60 273 10 177 87 67.05 264 11 203 76 72.76 279 12 215 91 70.26 306 13 182 95 65.70 277 14 162 113 58.91 275 15 180 81 68.97 261 16 198 101 66.22 299 17 198 82 70.71 280 18 189 78 70.79 267 19 185 87 68.01 272 20 183 86 68.03 269 21 198 96 67.35 294 22 173 86 66.80 259 23 196 96 67.12 292 24 189 75 71.59 264 25 169 94 64.26 263 26 211 98 68.28 309 27 180 72 71.43 252 28 160 86 65.04 246 29 178 79 69.26 257 30 176 90 66.17 266 31 196 80 71.01 276 32 156 83 65.27 239 33 158 86 64.75 244 34 169 68 71.31 237 35 183 83 68.80 266 36 168 88 65.62 256 37 144 71 66.98 215 38 158 73 68.40 231 39 163 76 68.20 239 40 138 66 67.65 204 41 152 78 66.09 230 42 149 72 67.42 221 43 150 69 68.49 219 44 134 58 69.79 192 45 146 59 71.22 205 46 155 61 71.76 216 47 143 57 71.50 200 48 155 57 73.11 212 49 148 59 71.50 207 50 124 61 67.03 185 51 134 59 69.43 193 52 120 58 67.42 178 53 126 50 71.59 176 54 111 59 65.29 170 55 112 45 71.34 157 56 130 44 74.71 174 57 127 46 73.41 173 58 120 67 64.17 187 59 110 45 70.97 155 60 93 56 62.42 149 61 105 51 67.31 156 62 92 58 61.33 150 63 106 40 72.60 146 64 99 48 67.35 147 65 84 44 65.62 128 66 85 33 72.03 118 67 86 43 66.67 129 68 72 35 67.29 107 69 88 44 66.67 132 70 94 42 69.12 136 71 72 38 65.45 110 72 88 50 63.77 138 73 87 36 70.73 123 74 71 50 58.68 121 75 74 31 70.48 105 76 58 29 66.67 87 77 70 32 68.63 102 78 67 25 72.83 92 79 61 27 69.32 88 80 51 29 63.75 80 81 41 13 75.93 54 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 60 321 15.75 381 2 23 339 6.35 362 3 16 309 4.92 325 4 21 316 6.23 337 5 22 344 6.01 366 6 16 331 4.61 347 7 8 329 2.37 337 8 3 329 0.90 332 9 14 363 3.71 377 10 12 318 3.64 330 11 15 340 4.23 355 12 13 349 3.59 362 13 13 321 3.89 334 14 6 330 1.79 336 15 14 356 3.78 370 16 11 380 2.81 391 17 9 342 2.56 351 18 15 364 3.96 379 19 10 321 3.02 331 20 5 382 1.29 387 21 11 397 2.70 408 22 11 340 3.13 351 23 13 334 3.75 347 24 14 363 3.71 377 25 12 336 3.45 348 26 14 372 3.63 386 27 11 377 2.84 388 28 11 348 3.06 359 29 7 340 2.02 347 30 16 347 4.41 363 31 8 333 2.35 341 32 14 315 4.26 329 33 13 318 3.93 331 34 14 345 3.90 359 35 14 338 3.98 352 36 12 305 3.79 317 37 16 320 4.76 336 38 8 304 2.56 312 39 13 299 4.17 312 40 5 309 1.59 314 41 15 296 4.82 311 42 13 307 4.06 320 43 7 270 2.53 277 44 9 272 3.20 281 45 7 300 2.28 307 46 10 277 3.48 287 47 3 283 1.05 286 48 7 262 2.60 269 49 6 268 2.19 274 50 9 256 3.40 265 51 4 269 1.47 273 52 3 236 1.26 239 53 9 219 3.95 228 54 5 241 2.03 246 55 6 226 2.59 232 56 7 235 2.89 242 57 2 215 0.92 217 58 10 225 4.26 235 59 7 209 3.24 216 60 6 197 2.96 203 61 3 205 1.44 208 62 8 177 4.32 185 63 8 185 4.15 193 64 3 179 1.65 182 65 3 172 1.71 175 66 0 184 0.00 184 67 5 173 2.81 178 68 2 181 1.09 183 69 2 173 1.14 175 70 2 171 1.16 173 71 6 159 3.64 165 72 6 168 3.45 174 73 2 156 1.27 158 74 5 146 3.31 151 75 2 169 1.17 171 76 3 144 2.04 147 77 6 138 4.17 144 78 4 122 3.17 126 79 1 113 0.88 114 80 1 93 1.06 94 81 4 80 4.76 84 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 301 961 23.85 1262 2 236 984 19.34 1220 3 260 965 21.22 1225 4 290 1003 22.43 1293 5 277 981 22.02 1258 6 254 952 21.06 1206 7 291 974 23.00 1265 8 218 988 18.08 1206 9 280 995 21.96 1275 10 280 980 22.22 1260 11 306 963 24.11 1269 12 271 980 21.66 1251 13 295 993 22.90 1288 14 290 1059 21.50 1349 15 297 976 23.33 1273 16 286 978 22.63 1264 17 278 1047 20.98 1325 18 296 1035 22.24 1331 19 290 1079 21.18 1369 20 288 1052 21.49 1340 21 301 1060 22.12 1361 22 280 1055 20.97 1335 23 259 1073 19.44 1332 24 294 1073 21.51 1367 25 298 1055 22.03 1353 26 260 1008 20.50 1268 27 287 1028 21.83 1315 28 272 1000 21.38 1272 29 292 1053 21.71 1345 30 281 990 22.11 1271 31 263 1025 20.42 1288 32 260 1006 20.54 1266 33 286 953 23.08 1239 34 251 1003 20.02 1254 35 247 998 19.84 1245 36 243 982 19.84 1225 37 242 911 20.99 1153 38 219 989 18.13 1208 39 234 912 20.42 1146 40 228 884 20.50 1112 41 217 862 20.11 1079 42 197 865 18.55 1062 43 230 820 21.90 1050 44 206 846 19.58 1052 45 196 812 19.44 1008 46 200 809 19.82 1009 47 207 787 20.82 994 48 188 800 19.03 988 49 196 741 20.92 937 50 173 735 19.05 908 51 180 714 20.13 894 52 183 687 21.03 870 53 176 661 21.03 837 54 161 728 18.11 889 55 166 734 18.44 900 56 155 670 18.79 825 57 154 669 18.71 823 58 158 668 19.13 826 59 150 602 19.95 752 60 138 608 18.50 746 61 142 585 19.53 727 62 133 584 18.55 717 63 122 586 17.23 708 64 141 573 19.75 714 65 114 555 17.04 669 66 121 552 17.98 673 67 115 510 18.40 625 68 112 501 18.27 613 69 105 511 17.05 616 70 116 473 19.69 589 71 82 507 13.92 589 72 97 485 16.67 582 73 96 388 19.83 484 74 96 427 18.36 523 75 94 409 18.69 503 76 96 400 19.35 496 77 82 406 16.80 488 78 86 380 18.45 466 79 76 369 17.08 445 80 76 332 18.63 408 81 58 249 18.89 307 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 37 30 55.22 67 2 50 31 61.73 81 3 47 23 67.14 70 4 41 38 51.90 79 5 48 20 70.59 68 6 42 33 56.00 75 7 45 27 62.50 72 8 30 25 54.55 55 9 43 22 66.15 65 10 52 23 69.33 75 11 37 31 54.41 68 12 38 24 61.29 62 13 32 17 65.31 49 14 28 26 51.85 54 15 35 24 59.32 59 16 37 18 67.27 55 17 24 16 60.00 40 18 43 14 75.44 57 19 25 15 62.50 40 20 23 13 63.89 36 21 23 9 71.88 32 22 29 20 59.18 49 23 22 16 57.89 38 24 25 11 69.44 36 25 14 6 70.00 20 26 30 19 61.22 49 27 33 9 78.57 42 28 21 4 84.00 25 29 24 12 66.67 36 30 25 19 56.82 44 31 32 9 78.05 41 32 24 12 66.67 36 33 17 7 70.83 24 34 25 5 83.33 30 35 16 11 59.26 27 36 22 10 68.75 32 37 17 12 58.62 29 38 11 8 57.89 19 39 17 10 62.96 27 40 17 10 62.96 27 41 12 11 52.17 23 42 24 6 80.00 30 43 14 8 63.64 22 44 13 5 72.22 18 45 9 5 64.29 14 46 12 8 60.00 20 47 8 7 53.33 15 48 8 7 53.33 15 49 13 5 72.22 18 50 11 4 73.33 15 51 7 2 77.78 9 52 8 4 66.67 12 53 8 4 66.67 12 54 11 4 73.33 15 55 9 5 64.29 14 56 12 1 92.31 13 57 12 3 80.00 15 58 5 2 71.43 7 59 12 3 80.00 15 60 9 3 75.00 12 61 10 3 76.92 13 62 6 4 60.00 10 63 12 3 80.00 15 64 7 2 77.78 9 65 6 0 100.00 6 66 10 2 83.33 12 67 4 2 66.67 6 68 11 3 78.57 14 69 8 2 80.00 10 70 5 4 55.56 9 71 3 1 75.00 4 72 2 2 50.00 4 73 5 4 55.56 9 74 3 3 50.00 6 75 3 1 75.00 4 76 4 4 50.00 8 77 4 2 66.67 6 78 4 4 50.00 8 79 2 4 33.33 6 80 3 2 60.00 5 81 1 0 100.00 1 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 11 110 9.09 121 2 5 116 4.13 121 3 11 117 8.59 128 4 3 118 2.48 121 5 3 107 2.73 110 6 3 89 3.26 92 7 3 91 3.19 94 8 3 97 3.00 100 9 5 92 5.15 97 10 0 85 0.00 85 11 4 95 4.04 99 12 2 96 2.04 98 13 3 89 3.26 92 14 2 89 2.20 91 15 1 77 1.28 78 16 2 78 2.50 80 17 0 56 0.00 56 18 0 63 0.00 63 19 1 66 1.49 67 20 0 56 0.00 56 21 0 58 0.00 58 22 1 57 1.72 58 23 4 55 6.78 59 24 1 43 2.27 44 25 2 50 3.85 52 26 0 41 0.00 41 27 0 39 0.00 39 28 1 54 1.82 55 29 1 41 2.38 42 30 0 43 0.00 43 31 0 36 0.00 36 32 2 50 3.85 52 33 2 40 4.76 42 34 0 35 0.00 35 35 1 34 2.86 35 36 0 28 0.00 28 37 0 35 0.00 35 38 0 40 0.00 40 39 1 21 4.55 22 40 0 26 0.00 26 41 1 25 3.85 26 42 0 24 0.00 24 43 2 27 6.90 29 44 0 26 0.00 26 45 0 22 0.00 22 46 0 31 0.00 31 47 0 26 0.00 26 48 0 23 0.00 23 49 0 18 0.00 18 50 0 17 0.00 17 51 0 25 0.00 25 52 0 21 0.00 21 53 0 22 0.00 22 54 1 13 7.14 14 55 1 14 6.67 15 56 0 16 0.00 16 57 1 16 5.88 17 58 0 21 0.00 21 59 1 12 7.69 13 60 0 12 0.00 12 61 0 22 0.00 22 62 1 14 6.67 15 63 0 20 0.00 20 64 1 8 11.11 9 65 0 15 0.00 15 66 0 9 0.00 9 67 0 9 0.00 9 68 0 13 0.00 13 69 0 13 0.00 13 70 1 12 7.69 13 71 1 12 7.69 13 72 0 5 0.00 5 73 0 11 0.00 11 74 0 7 0.00 7 75 0 16 0.00 16 76 0 7 0.00 7 77 0 7 0.00 7 78 0 6 0.00 6 79 0 9 0.00 9 80 0 5 0.00 5 81 0 3 0.00 3 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 92 336 21.50 428 2 48 327 12.80 375 3 102 318 24.29 420 4 41 340 10.76 381 5 87 288 23.20 375 6 42 293 12.54 335 7 87 318 21.48 405 8 39 269 12.66 308 9 81 280 22.44 361 10 52 273 16.00 325 11 64 260 19.75 324 12 39 266 12.79 305 13 75 240 23.81 315 14 39 235 14.23 274 15 70 237 22.80 307 16 29 256 10.18 285 17 57 221 20.50 278 18 32 205 13.50 237 19 55 196 21.91 251 20 28 190 12.84 218 21 56 179 23.83 235 22 30 194 13.39 224 23 54 184 22.69 238 24 22 186 10.58 208 25 49 203 19.44 252 26 24 164 12.77 188 27 49 159 23.56 208 28 24 149 13.87 173 29 51 122 29.48 173 30 19 131 12.67 150 31 40 130 23.53 170 32 18 150 10.71 168 33 41 121 25.31 162 34 21 123 14.58 144 35 39 97 28.68 136 36 23 116 16.55 139 37 37 128 22.42 165 38 18 107 14.40 125 39 36 114 24.00 150 40 17 112 13.18 129 41 39 114 25.49 153 42 16 107 13.01 123 43 29 94 23.58 123 44 12 87 12.12 99 45 34 93 26.77 127 46 15 84 15.15 99 47 30 80 27.27 110 48 10 89 10.10 99 49 30 79 27.52 109 50 12 75 13.79 87 51 32 85 27.35 117 52 13 66 16.46 79 53 28 82 25.45 110 54 14 66 17.50 80 55 28 62 31.11 90 56 12 65 15.58 77 57 23 64 26.44 87 58 12 60 16.67 72 59 27 63 30.00 90 60 12 61 16.44 73 61 26 58 30.95 84 62 14 51 21.54 65 63 26 63 29.21 89 64 13 59 18.06 72 65 22 57 27.85 79 66 11 50 18.03 61 67 23 48 32.39 71 68 8 56 12.50 64 69 22 50 30.56 72 70 9 43 17.31 52 71 23 51 31.08 74 72 9 44 16.98 53 73 20 44 31.25 64 74 12 41 22.64 53 75 18 34 34.62 52 76 9 33 21.43 42 77 17 31 35.42 48 78 4 34 10.53 38 79 17 35 32.69 52 80 4 25 13.79 29 81 12 8 60.00 20