/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH10_11_S20_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH10_11_S20_L001_R2_001_val_2.fq.gz
Data processed at 13:43 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
11468
Pairs without alignments under any condition
22715
Pairs that did not map uniquely
5817
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
303522
Methylated C's in CpG context
28865
Methylated C's in CHG context
1795
Methylated C's in CHH context
38188
Methylated C's in Unknown context
441
Unmethylated C's in CpG context
13798
Unmethylated C's in CHG context
55713
Unmethylated C's in CHH context
165163
Unmethylated C's in Unknown context
912
Percentage methylation (CpG context)
67.7%
Percentage methylation (CHG context)
3.1%
Percentage methylation (CHH context)
18.8%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5702
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5766
original bottom strand
Deduplication
Alignments analysed
11468
Unique alignments
9261
Duplicates removed
2207
Duplicated alignments were found at 1678 different positions
