CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 54 93 36.73 147 2 82 120 40.59 202 3 45 106 29.80 151 4 43 103 29.45 146 5 56 136 29.17 192 6 49 104 32.03 153 7 60 106 36.14 166 8 56 93 37.58 149 9 50 100 33.33 150 10 47 102 31.54 149 11 58 88 39.73 146 12 54 116 31.76 170 13 59 104 36.20 163 14 59 120 32.96 179 15 53 91 36.81 144 16 48 108 30.77 156 17 40 119 25.16 159 18 57 97 37.01 154 19 56 106 34.57 162 20 54 104 34.18 158 21 69 105 39.66 174 22 58 99 36.94 157 23 68 105 39.31 173 24 57 120 32.20 177 25 53 96 35.57 149 26 58 134 30.21 192 27 53 108 32.92 161 28 52 102 33.77 154 29 53 99 34.87 152 30 70 123 36.27 193 31 54 105 33.96 159 32 57 101 36.08 158 33 47 120 28.14 167 34 57 109 34.34 166 35 49 101 32.67 150 36 47 116 28.83 163 37 38 95 28.57 133 38 53 97 35.33 150 39 50 103 32.68 153 40 53 98 35.10 151 41 55 91 37.67 146 42 57 101 36.08 158 43 54 87 38.30 141 44 54 96 36.00 150 45 43 98 30.50 141 46 62 81 43.36 143 47 49 97 33.56 146 48 41 71 36.61 112 49 53 81 39.55 134 50 42 83 33.60 125 51 39 81 32.50 120 52 41 94 30.37 135 53 36 71 33.64 107 54 38 77 33.04 115 55 41 60 40.59 101 56 57 81 41.30 138 57 37 79 31.90 116 58 37 81 31.36 118 59 47 66 41.59 113 60 50 59 45.87 109 61 45 69 39.47 114 62 34 75 31.19 109 63 35 66 34.65 101 64 28 73 27.72 101 65 36 68 34.62 104 66 34 57 37.36 91 67 36 84 30.00 120 68 26 76 25.49 102 69 43 85 33.59 128 70 33 65 33.67 98 71 27 57 32.14 84 72 39 56 41.05 95 73 26 42 38.24 68 74 35 54 39.33 89 75 32 53 37.65 85 76 29 57 33.72 86 77 24 66 26.67 90 78 32 57 35.96 89 79 32 52 38.10 84 80 31 34 47.69 65 81 9 29 23.68 38 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 64 236 21.33 300 2 17 197 7.94 214 3 10 187 5.08 197 4 20 208 8.77 228 5 13 207 5.91 220 6 15 227 6.20 242 7 10 223 4.29 233 8 16 205 7.24 221 9 7 196 3.45 203 10 14 223 5.91 237 11 8 221 3.49 229 12 9 196 4.39 205 13 10 222 4.31 232 14 9 237 3.66 246 15 11 214 4.89 225 16 10 218 4.39 228 17 8 216 3.57 224 18 19 205 8.48 224 19 3 243 1.22 246 20 11 244 4.31 255 21 4 219 1.79 223 22 8 197 3.90 205 23 14 228 5.79 242 24 8 210 3.67 218 25 9 224 3.86 233 26 14 215 6.11 229 27 4 235 1.67 239 28 12 215 5.29 227 29 14 226 5.83 240 30 11 217 4.82 228 31 5 216 2.26 221 32 5 205 2.38 210 33 11 236 4.45 247 34 8 197 3.90 205 35 10 213 4.48 223 36 6 171 3.39 177 37 12 205 5.53 217 38 5 220 2.22 225 39 10 198 4.81 208 40 7 194 3.48 201 41 9 207 4.17 216 42 4 181 2.16 185 43 9 176 4.86 185 44 7 187 3.61 194 45 6 191 3.05 197 46 6 194 3.00 200 47 5 184 2.65 189 48 7 178 3.78 185 49 6 183 3.17 189 50 5 182 2.67 187 51 5 164 2.96 169 52 4 168 2.33 172 53 7 171 3.93 178 54 4 151 2.58 155 55 7 159 4.22 166 56 7 144 4.64 151 57 9 130 6.47 139 58 2 174 1.14 176 59 7 152 4.40 159 60 5 163 2.98 168 61 2 141 1.40 143 62 6 151 3.82 157 63 7 155 4.32 162 64 11 138 7.38 149 65 7 141 4.73 148 66 5 136 3.55 141 67 5 128 3.76 133 68 9 143 5.92 152 69 4 120 3.23 124 70 6 140 4.11 146 71 4 118 3.28 122 72 12 99 10.81 111 73 6 123 4.65 129 74 4 122 3.17 126 75 3 107 2.73 110 76 7 116 5.69 123 77 2 110 1.79 112 78 5 105 4.55 110 79 5 104 4.59 109 80 8 80 9.09 88 81 1 78 1.27 79 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 420 665 38.71 1085 2 359 686 34.35 1045 3 419 612 40.64 1031 4 440 665 39.82 1105 5 413 681 37.75 1094 6 390 636 38.01 1026 7 443 625 41.48 1068 8 388 690 35.99 1078 9 473 646 42.27 1119 10 444 613 42.01 1057 11 418 603 40.94 1021 12 432 619 41.10 1051 13 471 642 42.32 1113 14 460 670 40.71 1130 15 455 634 41.78 1089 16 473 651 42.08 1124 17 456 668 40.57 1124 18 485 686 41.42 1171 19 488 654 42.73 1142 20 474 647 42.28 1121 21 482 662 42.13 1144 22 474 632 42.86 1106 23 481 674 41.65 1155 24 523 661 44.17 1184 25 461 680 40.40 1141 26 456 698 39.51 1154 27 483 642 42.93 1125 28 489 694 41.34 1183 29 466 693 40.21 1159 30 463 677 40.61 1140 31 470 677 40.98 1147 32 477 655 42.14 1132 33 475 593 44.48 1068 34 501 608 45.18 1109 35 446 601 42.60 1047 36 459 649 41.43 1108 37 445 623 41.67 1068 38 459 624 42.38 1083 39 466 590 44.13 1056 40 456 576 44.19 1032 41 429 587 42.22 1016 42 435 612 41.55 1047 43 445 571 43.80 1016 44 433 588 42.41 1021 45 405 564 41.80 969 46 422 550 43.42 972 47 397 535 42.60 932 48 407 562 42.00 969 49 375 529 41.48 904 50 381 524 42.10 905 51 369 546 40.33 915 52 368 556 39.83 924 53 353 500 41.38 853 54 389 520 42.79 909 55 364 513 41.51 877 56 354 524 40.32 878 57 317 488 39.38 805 58 334 526 38.84 860 59 333 452 42.42 785 60 332 453 42.29 785 61 297 480 38.22 777 62 322 443 42.09 765 63 281 434 39.30 715 64 312 439 41.54 751 65 273 421 39.34 694 66 288 405 41.56 693 67 268 382 41.23 650 68 265 385 40.77 650 69 267 395 40.33 662 70 255 388 39.66 643 71 235 362 39.36 597 72 245 374 39.58 619 73 230 372 38.21 602 74 238 361 39.73 599 75 196 367 34.81 563 76 237 327 42.02 564 77 189 360 34.43 549 78 215 335 39.09 550 79 207 338 37.98 545 80 180 308 36.89 488 81 139 212 39.60 351 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 27 61 30.68 88 2 24 47 33.80 71 3 42 57 42.42 99 4 16 51 23.88 67 5 26 56 31.71 82 6 22 49 30.99 71 7 18 46 28.12 64 8 20 40 33.33 60 9 18 45 28.57 63 10 26 46 36.11 72 11 11 44 20.00 55 12 17 31 35.42 48 13 19 42 31.15 61 14 19 38 33.33 57 15 5 39 11.36 44 16 19 38 33.33 57 17 10 41 19.61 51 18 13 24 35.14 37 19 12 31 27.91 43 20 9 23 28.12 32 21 9 21 30.00 30 22 13 23 36.11 36 23 13 24 35.14 37 24 7 41 14.58 48 25 15 27 35.71 42 26 7 27 20.59 34 27 10 26 27.78 36 28 10 24 29.41 34 29 8 24 25.00 32 30 5 21 19.23 26 31 7 22 24.14 29 32 8 22 26.67 30 33 13 25 34.21 38 34 6 16 27.27 22 35 11 19 36.67 30 36 9 11 45.00 20 37 6 21 22.22 27 38 6 23 20.69 29 39 9 21 30.00 30 40 6 14 30.00 20 41 8 22 26.67 30 42 9 16 36.00 25 43 8 16 33.33 24 44 7 11 38.89 18 45 8 19 29.63 27 46 8 15 34.78 23 47 4 15 21.05 19 48 6 17 26.09 23 49 10 18 35.71 28 50 3 10 23.08 13 51 4 16 20.00 20 52 4 11 26.67 15 53 7 10 41.18 17 54 7 6 53.85 13 55 11 12 47.83 23 56 5 11 31.25 16 57 10 9 52.63 19 58 2 12 14.29 14 59 5 8 38.46 13 60 4 7 36.36 11 61 3 15 16.67 18 62 2 11 15.38 13 63 3 7 30.00 10 64 0 8 0.00 8 65 4 7 36.36 11 66 4 9 30.77 13 67 6 11 35.29 17 68 7 7 50.00 14 69 5 12 29.41 17 70 4 7 36.36 11 71 2 9 18.18 11 72 4 7 36.36 11 73 4 10 28.57 14 74 6 11 35.29 17 75 0 2 0.00 2 76 5 11 31.25 16 77 2 6 25.00 8 78 1 2 33.33 3 79 4 7 36.36 11 80 5 4 55.56 9 81 2 4 33.33 6 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 12 99 10.81 111 2 9 90 9.09 99 3 26 119 17.93 145 4 4 121 3.20 125 5 1 93 1.06 94 6 4 89 4.30 93 7 4 78 4.88 82 8 9 101 8.18 110 9 3 97 3.00 100 10 1 62 1.59 63 11 2 93 2.11 95 12 4 102 3.77 106 13 2 69 2.82 71 14 2 68 2.86 70 15 3 65 4.41 68 16 4 71 5.33 75 17 5 59 7.81 64 18 1 70 1.41 71 19 3 66 4.35 69 20 2 50 3.85 52 21 2 62 3.12 64 22 1 64 1.54 65 23 1 58 1.69 59 24 2 57 3.39 59 25 1 44 2.22 45 26 0 63 0.00 63 27 1 56 1.75 57 28 1 48 2.04 49 29 3 48 5.88 51 30 1 51 1.92 52 31 0 47 0.00 47 32 1 43 2.27 44 33 0 39 0.00 39 34 0 49 0.00 49 35 1 47 2.08 48 36 0 43 0.00 43 37 1 44 2.22 45 38 1 30 3.23 31 39 1 41 2.38 42 40 0 40 0.00 40 41 0 25 0.00 25 42 3 29 9.38 32 43 1 39 2.50 40 44 0 31 0.00 31 45 1 32 3.03 33 46 1 30 3.23 31 47 0 26 0.00 26 48 1 32 3.03 33 49 2 32 5.88 34 50 0 32 0.00 32 51 1 20 4.76 21 52 0 31 0.00 31 53 2 20 9.09 22 54 2 20 9.09 22 55 0 23 0.00 23 56 2 18 10.00 20 57 2 30 6.25 32 58 2 28 6.67 30 59 2 23 8.00 25 60 1 25 3.85 26 61 0 31 0.00 31 62 2 16 11.11 18 63 2 21 8.70 23 64 2 21 8.70 23 65 0 18 0.00 18 66 0 16 0.00 16 67 3 25 10.71 28 68 0 15 0.00 15 69 1 20 4.76 21 70 1 18 5.26 19 71 2 14 12.50 16 72 0 12 0.00 12 73 2 12 14.29 14 74 0 10 0.00 10 75 0 15 0.00 15 76 1 13 7.14 14 77 2 12 14.29 14 78 0 15 0.00 15 79 0 12 0.00 12 80 0 13 0.00 13 81 0 2 0.00 2 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 198 341 36.73 539 2 122 321 27.54 443 3 196 301 39.44 497 4 115 317 26.62 432 5 185 301 38.07 486 6 118 272 30.26 390 7 191 270 41.43 461 8 129 263 32.91 392 9 184 243 43.09 427 10 130 240 35.14 370 11 194 244 44.29 438 12 141 217 39.39 358 13 182 259 41.27 441 14 133 244 35.28 377 15 170 235 41.98 405 16 141 230 38.01 371 17 165 229 41.88 394 18 129 189 40.57 318 19 147 186 44.14 333 20 99 208 32.25 307 21 152 203 42.82 355 22 97 185 34.40 282 23 131 181 41.99 312 24 98 189 34.15 287 25 136 189 41.85 325 26 89 162 35.46 251 27 111 153 42.05 264 28 85 167 33.73 252 29 108 158 40.60 266 30 80 172 31.75 252 31 108 142 43.20 250 32 64 153 29.49 217 33 104 141 42.45 245 34 74 144 33.94 218 35 108 134 44.63 242 36 69 133 34.16 202 37 97 101 48.99 198 38 56 125 30.94 181 39 99 112 46.92 211 40 68 122 35.79 190 41 73 114 39.04 187 42 61 119 33.89 180 43 88 94 48.35 182 44 49 116 29.70 165 45 89 82 52.05 171 46 52 119 30.41 171 47 78 94 45.35 172 48 55 101 35.26 156 49 76 97 43.93 173 50 49 97 33.56 146 51 74 78 48.68 152 52 44 79 35.77 123 53 67 77 46.53 144 54 48 79 37.80 127 55 71 70 50.35 141 56 39 80 32.77 119 57 60 60 50.00 120 58 39 74 34.51 113 59 57 82 41.01 139 60 38 64 37.25 102 61 60 58 50.85 118 62 36 56 39.13 92 63 61 79 43.57 140 64 35 69 33.65 104 65 51 51 50.00 102 66 36 60 37.50 96 67 54 49 52.43 103 68 30 55 35.29 85 69 49 52 48.51 101 70 32 54 37.21 86 71 49 49 50.00 98 72 40 51 43.96 91 73 50 35 58.82 85 74 35 32 52.24 67 75 54 46 54.00 100 76 29 47 38.16 76 77 49 31 61.25 80 78 38 53 41.76 91 79 38 32 54.29 70 80 28 31 47.46 59 81 23 16 58.97 39