/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH10_08_S19_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH10_08_S19_L001_R2_001_val_2.fq.gz
Data processed at 13:43 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
9907
Pairs without alignments under any condition
22552
Pairs that did not map uniquely
7541
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
246661
Methylated C's in CpG context
9354
Methylated C's in CHG context
1670
Methylated C's in CHH context
69624
Methylated C's in Unknown context
697
Unmethylated C's in CpG context
18049
Unmethylated C's in CHG context
36621
Unmethylated C's in CHH context
111343
Unmethylated C's in Unknown context
842
Percentage methylation (CpG context)
34.1%
Percentage methylation (CHG context)
4.4%
Percentage methylation (CHH context)
38.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
4914
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
4993
original bottom strand
Deduplication
Alignments analysed
9907
Unique alignments
8269
Duplicates removed
1638
Duplicated alignments were found at 1219 different positions
