CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 227 77 74.67 304 2 278 110 71.65 388 3 206 106 66.03 312 4 186 97 65.72 283 5 229 84 73.16 313 6 213 73 74.48 286 7 217 73 74.83 290 8 209 87 70.61 296 9 202 104 66.01 306 10 215 93 69.81 308 11 237 86 73.37 323 12 213 88 70.76 301 13 229 90 71.79 319 14 222 103 68.31 325 15 244 74 76.73 318 16 229 91 71.56 320 17 204 88 69.86 292 18 250 80 75.76 330 19 196 86 69.50 282 20 229 96 70.46 325 21 242 88 73.33 330 22 224 85 72.49 309 23 244 84 74.39 328 24 240 85 73.85 325 25 255 69 78.70 324 26 214 104 67.30 318 27 220 78 73.83 298 28 227 76 74.92 303 29 226 72 75.84 298 30 199 83 70.57 282 31 217 72 75.09 289 32 200 74 72.99 274 33 207 81 71.88 288 34 232 62 78.91 294 35 237 62 79.26 299 36 200 87 69.69 287 37 236 95 71.30 331 38 216 72 75.00 288 39 234 78 75.00 312 40 190 69 73.36 259 41 201 71 73.90 272 42 187 82 69.52 269 43 198 69 74.16 267 44 210 73 74.20 283 45 181 78 69.88 259 46 174 66 72.50 240 47 205 63 76.49 268 48 194 59 76.68 253 49 172 63 73.19 235 50 177 68 72.24 245 51 178 61 74.48 239 52 180 46 79.65 226 53 175 45 79.55 220 54 186 44 80.87 230 55 162 62 72.32 224 56 153 51 75.00 204 57 168 71 70.29 239 58 166 66 71.55 232 59 138 57 70.77 195 60 139 58 70.56 197 61 143 51 73.71 194 62 114 48 70.37 162 63 130 38 77.38 168 64 125 49 71.84 174 65 123 45 73.21 168 66 138 38 78.41 176 67 122 38 76.25 160 68 140 43 76.50 183 69 111 44 71.61 155 70 95 36 72.52 131 71 108 31 77.70 139 72 104 38 73.24 142 73 109 33 76.76 142 74 109 40 73.15 149 75 117 42 73.58 159 76 92 40 69.70 132 77 87 36 70.73 123 78 115 36 76.16 151 79 96 30 76.19 126 80 83 25 76.85 108 81 57 10 85.07 67 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 59 388 13.20 447 2 30 402 6.94 432 3 16 385 3.99 401 4 14 366 3.68 380 5 10 412 2.37 422 6 16 379 4.05 395 7 18 381 4.51 399 8 11 402 2.66 413 9 15 398 3.63 413 10 27 427 5.95 454 11 12 402 2.90 414 12 12 405 2.88 417 13 13 430 2.93 443 14 10 408 2.39 418 15 14 418 3.24 432 16 3 399 0.75 402 17 10 384 2.54 394 18 13 385 3.27 398 19 12 433 2.70 445 20 12 437 2.67 449 21 17 431 3.79 448 22 17 399 4.09 416 23 18 406 4.25 424 24 19 420 4.33 439 25 16 391 3.93 407 26 11 401 2.67 412 27 14 384 3.52 398 28 18 369 4.65 387 29 14 399 3.39 413 30 15 403 3.59 418 31 16 369 4.16 385 32 7 361 1.90 368 33 19 403 4.50 422 34 12 351 3.31 363 35 10 351 2.77 361 36 11 377 2.84 388 37 10 346 2.81 356 38 18 401 4.30 419 39 8 363 2.16 371 40 16 344 4.44 360 41 10 345 2.82 355 42 14 318 4.22 332 43 9 333 2.63 342 44 11 348 3.06 359 45 16 299 5.08 315 46 3 326 0.91 329 47 12 323 3.58 335 48 6 308 1.91 314 49 12 299 3.86 311 50 7 326 2.10 333 51 15 299 4.78 314 52 5 275 1.79 280 53 4 292 1.35 296 54 6 297 1.98 303 55 6 276 2.13 282 56 9 289 3.02 298 57 6 275 2.14 281 58 11 242 4.35 253 59 7 244 2.79 251 60 8 255 3.04 263 61 2 257 0.77 259 62 6 234 2.50 240 63 5 231 2.12 236 64 4 229 1.72 233 65 3 230 1.29 233 66 3 210 1.41 213 67 3 229 1.29 232 68 6 209 2.79 215 69 5 179 2.72 184 70 3 186 1.59 189 71 7 190 3.55 197 72 3 185 1.60 188 73 12 181 6.22 193 74 4 186 2.11 190 75 4 160 2.44 164 76 7 158 4.24 165 77 6 183 3.17 189 78 3 152 1.94 155 79 3 140 2.10 143 80 9 149 5.70 158 81 2 98 2.00 100 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 292 1058 21.63 1350 2 239 1095 17.92 1334 3 287 1049 21.48 1336 4 271 1078 20.09 1349 5 242 1080 18.31 1322 6 232 1076 17.74 1308 7 261 1036 20.12 1297 8 239 1042 18.66 1281 9 275 1124 19.66 1399 10 281 1045 21.19 1326 11 261 1071 19.59 1332 12 251 1066 19.06 1317 13 300 1017 22.78 1317 14 278 1090 20.32 1368 15 250 1060 19.08 1310 16 234 1111 17.40 1345 17 237 1110 17.59 1347 18 268 1182 18.48 1450 19 308 1130 21.42 1438 20 250 1172 17.58 1422 21 267 1155 18.78 1422 22 246 1159 17.51 1405 23 270 1086 19.91 1356 24 265 1152 18.70 1417 25 255 1117 18.59 1372 26 243 1058 18.68 1301 27 260 1094 19.20 1354 28 266 1081 19.75 1347 29 280 1089 20.45 1369 30 229 1096 17.28 1325 31 249 1089 18.61 1338 32 222 1067 17.22 1289 33 261 1077 19.51 1338 34 225 1063 17.47 1288 35 220 1064 17.13 1284 36 185 1049 14.99 1234 37 220 1026 17.66 1246 38 193 991 16.30 1184 39 223 983 18.49 1206 40 183 983 15.69 1166 41 176 954 15.58 1130 42 168 1048 13.82 1216 43 181 994 15.40 1175 44 171 928 15.56 1099 45 174 976 15.13 1150 46 166 943 14.97 1109 47 156 897 14.81 1053 48 176 923 16.01 1099 49 170 860 16.50 1030 50 150 867 14.75 1017 51 133 833 13.77 966 52 136 872 13.49 1008 53 135 860 13.57 995 54 160 835 16.08 995 55 133 777 14.62 910 56 116 767 13.14 883 57 117 778 13.07 895 58 123 760 13.93 883 59 134 747 15.21 881 60 111 725 13.28 836 61 124 703 14.99 827 62 120 649 15.60 769 63 116 693 14.34 809 64 112 674 14.25 786 65 90 648 12.20 738 66 99 643 13.34 742 67 100 616 13.97 716 68 100 583 14.64 683 69 102 581 14.93 683 70 82 591 12.18 673 71 78 552 12.38 630 72 81 581 12.24 662 73 81 574 12.37 655 74 74 524 12.37 598 75 71 532 11.77 603 76 70 528 11.71 598 77 63 518 10.84 581 78 64 494 11.47 558 79 69 476 12.66 545 80 54 437 11.00 491 81 41 285 12.58 326 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 63 55 53.39 118 2 67 31 68.37 98 3 112 34 76.71 146 4 84 28 75.00 112 5 56 31 64.37 87 6 78 32 70.91 110 7 63 29 68.48 92 8 70 30 70.00 100 9 61 29 67.78 90 10 52 30 63.41 82 11 53 30 63.86 83 12 60 24 71.43 84 13 61 25 70.93 86 14 61 29 67.78 90 15 49 31 61.25 80 16 53 21 71.62 74 17 56 26 68.29 82 18 67 18 78.82 85 19 65 17 79.27 82 20 46 24 65.71 70 21 47 16 74.60 63 22 62 24 72.09 86 23 56 23 70.89 79 24 41 12 77.36 53 25 44 12 78.57 56 26 48 13 78.69 61 27 52 14 78.79 66 28 39 16 70.91 55 29 37 18 67.27 55 30 45 10 81.82 55 31 33 15 68.75 48 32 44 13 77.19 57 33 35 20 63.64 55 34 49 16 75.38 65 35 33 13 71.74 46 36 31 15 67.39 46 37 35 10 77.78 45 38 24 7 77.42 31 39 25 12 67.57 37 40 39 11 78.00 50 41 23 10 69.70 33 42 23 12 65.71 35 43 26 8 76.47 34 44 23 9 71.88 32 45 26 13 66.67 39 46 31 7 81.58 38 47 25 11 69.44 36 48 21 5 80.77 26 49 27 6 81.82 33 50 22 6 78.57 28 51 21 8 72.41 29 52 22 5 81.48 27 53 18 7 72.00 25 54 21 9 70.00 30 55 31 9 77.50 40 56 13 9 59.09 22 57 29 6 82.86 35 58 25 5 83.33 30 59 23 9 71.88 32 60 19 7 73.08 26 61 25 6 80.65 31 62 15 4 78.95 19 63 16 6 72.73 22 64 15 6 71.43 21 65 22 3 88.00 25 66 11 3 78.57 14 67 15 8 65.22 23 68 13 4 76.47 17 69 14 3 82.35 17 70 18 5 78.26 23 71 10 7 58.82 17 72 10 5 66.67 15 73 14 5 73.68 19 74 8 7 53.33 15 75 17 4 80.95 21 76 22 3 88.00 25 77 14 6 70.00 20 78 12 7 63.16 19 79 7 6 53.85 13 80 11 6 64.71 17 81 5 2 71.43 7 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 5 163 2.98 168 2 5 145 3.33 150 3 17 175 8.85 192 4 3 174 1.69 177 5 5 133 3.62 138 6 2 138 1.43 140 7 4 159 2.45 163 8 6 134 4.29 140 9 2 125 1.57 127 10 4 107 3.60 111 11 2 117 1.68 119 12 2 129 1.53 131 13 3 97 3.00 100 14 3 115 2.54 118 15 4 111 3.48 115 16 3 96 3.03 99 17 1 108 0.92 109 18 1 91 1.09 92 19 1 91 1.09 92 20 1 95 1.04 96 21 3 90 3.23 93 22 3 83 3.49 86 23 0 107 0.00 107 24 3 71 4.05 74 25 3 75 3.85 78 26 3 81 3.57 84 27 1 73 1.35 74 28 2 73 2.67 75 29 2 80 2.44 82 30 3 96 3.03 99 31 0 70 0.00 70 32 0 61 0.00 61 33 3 61 4.69 64 34 3 74 3.90 77 35 2 80 2.44 82 36 0 64 0.00 64 37 1 53 1.85 54 38 0 59 0.00 59 39 3 47 6.00 50 40 0 49 0.00 49 41 0 62 0.00 62 42 0 48 0.00 48 43 1 44 2.22 45 44 0 52 0.00 52 45 2 37 5.13 39 46 1 56 1.75 57 47 1 49 2.00 50 48 1 59 1.67 60 49 0 39 0.00 39 50 0 35 0.00 35 51 1 42 2.33 43 52 0 39 0.00 39 53 0 45 0.00 45 54 1 26 3.70 27 55 0 41 0.00 41 56 0 42 0.00 42 57 1 35 2.78 36 58 0 38 0.00 38 59 0 39 0.00 39 60 0 45 0.00 45 61 1 31 3.12 32 62 2 40 4.76 42 63 1 23 4.17 24 64 0 39 0.00 39 65 0 24 0.00 24 66 0 30 0.00 30 67 1 22 4.35 23 68 1 24 4.00 25 69 0 29 0.00 29 70 2 24 7.69 26 71 0 23 0.00 23 72 3 29 9.38 32 73 0 31 0.00 31 74 1 20 4.76 21 75 0 23 0.00 23 76 0 25 0.00 25 77 0 14 0.00 14 78 0 29 0.00 29 79 0 21 0.00 21 80 0 19 0.00 19 81 1 6 14.29 7 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 63 474 11.73 537 2 43 427 9.15 470 3 65 444 12.77 509 4 38 457 7.68 495 5 54 400 11.89 454 6 47 370 11.27 417 7 64 371 14.71 435 8 26 378 6.44 404 9 55 376 12.76 431 10 41 374 9.88 415 11 52 374 12.21 426 12 40 340 10.53 380 13 47 354 11.72 401 14 31 363 7.87 394 15 45 351 11.36 396 16 36 343 9.50 379 17 55 301 15.45 356 18 25 298 7.74 323 19 38 296 11.38 334 20 30 293 9.29 323 21 44 302 12.72 346 22 37 263 12.33 300 23 36 265 11.96 301 24 27 251 9.71 278 25 36 263 12.04 299 26 31 257 10.76 288 27 37 256 12.63 293 28 21 236 8.17 257 29 28 219 11.34 247 30 21 220 8.71 241 31 25 228 9.88 253 32 22 214 9.32 236 33 17 187 8.33 204 34 23 195 10.55 218 35 20 206 8.85 226 36 20 215 8.51 235 37 26 179 12.68 205 38 22 182 10.78 204 39 23 188 10.90 211 40 26 188 12.15 214 41 17 182 8.54 199 42 20 179 10.05 199 43 21 150 12.28 171 44 18 174 9.38 192 45 26 149 14.86 175 46 13 143 8.33 156 47 27 146 15.61 173 48 18 153 10.53 171 49 25 134 15.72 159 50 18 126 12.50 144 51 21 155 11.93 176 52 15 129 10.42 144 53 17 139 10.90 156 54 14 122 10.29 136 55 18 127 12.41 145 56 11 113 8.87 124 57 17 105 13.93 122 58 11 91 10.78 102 59 15 116 11.45 131 60 12 110 9.84 122 61 13 102 11.30 115 62 17 93 15.45 110 63 13 94 12.15 107 64 10 92 9.80 102 65 17 93 15.45 110 66 14 90 13.46 104 67 14 102 12.07 116 68 13 87 13.00 100 69 11 63 14.86 74 70 7 73 8.75 80 71 16 82 16.33 98 72 10 87 10.31 97 73 13 75 14.77 88 74 9 61 12.86 70 75 16 60 21.05 76 76 8 76 9.52 84 77 11 69 13.75 80 78 8 58 12.12 66 79 11 63 14.86 74 80 5 52 8.77 57 81 4 19 17.39 23