/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH10_01_S18_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH10_01_S18_L001_R2_001_val_2.fq.gz
Data processed at 13:43 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
11719
Pairs without alignments under any condition
23157
Pairs that did not map uniquely
5124
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
326695
Methylated C's in CpG context
35976
Methylated C's in CHG context
2121
Methylated C's in CHH context
33948
Methylated C's in Unknown context
457
Unmethylated C's in CpG context
13425
Unmethylated C's in CHG context
63208
Unmethylated C's in CHH context
178017
Unmethylated C's in Unknown context
725
Percentage methylation (CpG context)
72.8%
Percentage methylation (CHG context)
3.2%
Percentage methylation (CHH context)
16.0%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5784
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5935
original bottom strand
Deduplication
Alignments analysed
11719
Unique alignments
9676
Duplicates removed
2043
Duplicated alignments were found at 1570 different positions
