CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 189 98 65.85 287 2 248 108 69.66 356 3 183 79 69.85 262 4 170 103 62.27 273 5 199 85 70.07 284 6 208 94 68.87 302 7 178 105 62.90 283 8 163 91 64.17 254 9 204 87 70.10 291 10 177 95 65.07 272 11 228 87 72.38 315 12 230 84 73.25 314 13 208 81 71.97 289 14 204 81 71.58 285 15 188 77 70.94 265 16 181 92 66.30 273 17 190 78 70.90 268 18 228 84 73.08 312 19 190 83 69.60 273 20 195 92 67.94 287 21 199 80 71.33 279 22 194 79 71.06 273 23 226 85 72.67 311 24 205 82 71.43 287 25 188 75 71.48 263 26 181 75 70.70 256 27 202 80 71.63 282 28 187 70 72.76 257 29 166 78 68.03 244 30 191 86 68.95 277 31 192 75 71.91 267 32 191 63 75.20 254 33 182 89 67.16 271 34 185 97 65.60 282 35 187 73 71.92 260 36 194 78 71.32 272 37 192 77 71.38 269 38 185 84 68.77 269 39 182 80 69.47 262 40 171 74 69.80 245 41 164 71 69.79 235 42 184 72 71.88 256 43 178 63 73.86 241 44 177 62 74.06 239 45 169 56 75.11 225 46 155 70 68.89 225 47 180 69 72.29 249 48 144 79 64.57 223 49 166 64 72.17 230 50 164 61 72.89 225 51 150 59 71.77 209 52 163 68 70.56 231 53 119 59 66.85 178 54 150 64 70.09 214 55 158 50 75.96 208 56 137 60 69.54 197 57 152 58 72.38 210 58 150 62 70.75 212 59 151 58 72.25 209 60 130 38 77.38 168 61 152 45 77.16 197 62 117 53 68.82 170 63 104 62 62.65 166 64 120 54 68.97 174 65 142 50 73.96 192 66 135 49 73.37 184 67 101 56 64.33 157 68 104 40 72.22 144 69 107 40 72.79 147 70 102 50 67.11 152 71 127 43 74.71 170 72 113 44 71.97 157 73 101 39 72.14 140 74 97 33 74.62 130 75 98 35 73.68 133 76 81 43 65.32 124 77 100 39 71.94 139 78 81 45 64.29 126 79 84 31 73.04 115 80 76 38 66.67 114 81 65 19 77.38 84 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 85 363 18.97 448 2 21 375 5.30 396 3 22 358 5.79 380 4 15 344 4.18 359 5 18 369 4.65 387 6 21 297 6.60 318 7 13 377 3.33 390 8 17 378 4.30 395 9 11 360 2.96 371 10 15 368 3.92 383 11 11 362 2.95 373 12 12 338 3.43 350 13 10 354 2.75 364 14 14 351 3.84 365 15 17 352 4.61 369 16 7 344 1.99 351 17 10 358 2.72 368 18 15 399 3.62 414 19 13 337 3.71 350 20 20 363 5.22 383 21 13 407 3.10 420 22 10 360 2.70 370 23 12 334 3.47 346 24 15 386 3.74 401 25 8 334 2.34 342 26 13 350 3.58 363 27 10 385 2.53 395 28 12 331 3.50 343 29 19 354 5.09 373 30 7 330 2.08 337 31 13 343 3.65 356 32 12 319 3.63 331 33 22 347 5.96 369 34 10 327 2.97 337 35 8 319 2.45 327 36 13 336 3.72 349 37 9 336 2.61 345 38 10 312 3.11 322 39 13 327 3.82 340 40 11 329 3.24 340 41 10 334 2.91 344 42 8 314 2.48 322 43 5 298 1.65 303 44 7 302 2.27 309 45 6 284 2.07 290 46 15 304 4.70 319 47 9 273 3.19 282 48 4 279 1.41 283 49 9 317 2.76 326 50 10 296 3.27 306 51 8 290 2.68 298 52 12 244 4.69 256 53 9 256 3.40 265 54 4 288 1.37 292 55 2 277 0.72 279 56 6 259 2.26 265 57 7 240 2.83 247 58 12 292 3.95 304 59 11 223 4.70 234 60 9 266 3.27 275 61 11 246 4.28 257 62 7 234 2.90 241 63 6 216 2.70 222 64 6 225 2.60 231 65 14 213 6.17 227 66 7 209 3.24 216 67 3 199 1.49 202 68 6 207 2.82 213 69 4 171 2.29 175 70 7 193 3.50 200 71 6 196 2.97 202 72 7 168 4.00 175 73 7 158 4.24 165 74 8 196 3.92 204 75 4 178 2.20 182 76 6 175 3.31 181 77 2 174 1.14 176 78 10 179 5.29 189 79 7 147 4.55 154 80 6 154 3.75 160 81 3 102 2.86 105 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 243 892 21.41 1135 2 207 952 17.86 1159 3 210 881 19.25 1091 4 225 878 20.40 1103 5 256 927 21.64 1183 6 210 937 18.31 1147 7 223 926 19.41 1149 8 180 949 15.94 1129 9 206 916 18.36 1122 10 253 924 21.50 1177 11 279 925 23.17 1204 12 219 994 18.05 1213 13 241 971 19.88 1212 14 236 964 19.67 1200 15 228 983 18.83 1211 16 231 1004 18.70 1235 17 228 960 19.19 1188 18 245 1008 19.55 1253 19 225 1027 17.97 1252 20 250 1032 19.50 1282 21 234 1053 18.18 1287 22 198 1007 16.43 1205 23 209 982 17.55 1191 24 251 1009 19.92 1260 25 211 980 17.72 1191 26 228 1028 18.15 1256 27 220 988 18.21 1208 28 243 977 19.92 1220 29 234 1001 18.95 1235 30 214 982 17.89 1196 31 210 946 18.17 1156 32 195 949 17.05 1144 33 218 924 19.09 1142 34 210 947 18.15 1157 35 198 974 16.89 1172 36 194 974 16.61 1168 37 171 938 15.42 1109 38 179 952 15.83 1131 39 174 906 16.11 1080 40 181 883 17.01 1064 41 163 876 15.69 1039 42 175 844 17.17 1019 43 152 833 15.43 985 44 182 877 17.19 1059 45 158 850 15.67 1008 46 152 850 15.17 1002 47 147 830 15.05 977 48 156 769 16.86 925 49 137 782 14.91 919 50 139 727 16.05 866 51 122 787 13.42 909 52 124 792 13.54 916 53 135 758 15.12 893 54 148 763 16.25 911 55 147 728 16.80 875 56 110 748 12.82 858 57 117 742 13.62 859 58 112 680 14.14 792 59 127 642 16.51 769 60 120 710 14.46 830 61 124 630 16.45 754 62 111 640 14.78 751 63 93 622 13.01 715 64 96 574 14.33 670 65 87 594 12.78 681 66 98 593 14.18 691 67 97 598 13.96 695 68 101 572 15.01 673 69 88 591 12.96 679 70 88 550 13.79 638 71 91 544 14.33 635 72 77 523 12.83 600 73 90 560 13.85 650 74 80 515 13.45 595 75 72 511 12.35 583 76 75 517 12.67 592 77 85 483 14.96 568 78 55 463 10.62 518 79 73 429 14.54 502 80 50 390 11.36 440 81 35 284 10.97 319 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 61 33 64.89 94 2 82 40 67.21 122 3 120 34 77.92 154 4 63 26 70.79 89 5 73 29 71.57 102 6 59 30 66.29 89 7 66 42 61.11 108 8 65 35 65.00 100 9 55 29 65.48 84 10 45 35 56.25 80 11 68 33 67.33 101 12 67 27 71.28 94 13 67 34 66.34 101 14 63 33 65.62 96 15 59 29 67.05 88 16 75 29 72.12 104 17 63 30 67.74 93 18 57 25 69.51 82 19 51 23 68.92 74 20 62 17 78.48 79 21 51 19 72.86 70 22 45 17 72.58 62 23 57 21 73.08 78 24 55 17 76.39 72 25 39 18 68.42 57 26 41 23 64.06 64 27 45 22 67.16 67 28 32 22 59.26 54 29 39 16 70.91 55 30 47 15 75.81 62 31 27 16 62.79 43 32 38 12 76.00 50 33 25 12 67.57 37 34 31 13 70.45 44 35 33 11 75.00 44 36 40 12 76.92 52 37 33 10 76.74 43 38 26 11 70.27 37 39 28 14 66.67 42 40 29 15 65.91 44 41 30 17 63.83 47 42 23 10 69.70 33 43 33 10 76.74 43 44 14 13 51.85 27 45 18 8 69.23 26 46 28 12 70.00 40 47 27 7 79.41 34 48 25 11 69.44 36 49 29 13 69.05 42 50 18 9 66.67 27 51 21 9 70.00 30 52 26 6 81.25 32 53 18 8 69.23 26 54 24 8 75.00 32 55 23 9 71.88 32 56 22 8 73.33 30 57 13 3 81.25 16 58 13 11 54.17 24 59 21 3 87.50 24 60 22 8 73.33 30 61 17 8 68.00 25 62 18 5 78.26 23 63 14 6 70.00 20 64 14 5 73.68 19 65 15 7 68.18 22 66 15 1 93.75 16 67 12 8 60.00 20 68 14 2 87.50 16 69 13 8 61.90 21 70 17 10 62.96 27 71 10 5 66.67 15 72 12 6 66.67 18 73 9 4 69.23 13 74 10 6 62.50 16 75 14 2 87.50 16 76 9 5 64.29 14 77 8 4 66.67 12 78 9 5 64.29 14 79 4 2 66.67 6 80 6 5 54.55 11 81 5 2 71.43 7 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 4 112 3.45 116 2 10 142 6.58 152 3 40 177 18.43 217 4 7 191 3.54 198 5 1 110 0.90 111 6 2 130 1.52 132 7 4 130 2.99 134 8 5 163 2.98 168 9 1 107 0.93 108 10 2 106 1.85 108 11 3 128 2.29 131 12 5 149 3.25 154 13 0 123 0.00 123 14 6 142 4.05 148 15 2 148 1.33 150 16 3 130 2.26 133 17 5 120 4.00 125 18 3 99 2.94 102 19 0 84 0.00 84 20 2 100 1.96 102 21 3 93 3.12 96 22 1 106 0.93 107 23 1 83 1.19 84 24 3 91 3.19 94 25 1 105 0.94 106 26 2 81 2.41 83 27 1 77 1.28 78 28 0 94 0.00 94 29 0 74 0.00 74 30 2 69 2.82 71 31 1 77 1.28 78 32 0 75 0.00 75 33 3 73 3.95 76 34 1 58 1.69 59 35 2 69 2.82 71 36 1 75 1.32 76 37 0 60 0.00 60 38 2 57 3.39 59 39 2 51 3.77 53 40 0 38 0.00 38 41 1 68 1.45 69 42 0 60 0.00 60 43 1 66 1.49 67 44 0 49 0.00 49 45 1 47 2.08 48 46 1 46 2.13 47 47 0 58 0.00 58 48 1 44 2.22 45 49 0 41 0.00 41 50 0 60 0.00 60 51 2 33 5.71 35 52 2 42 4.55 44 53 1 37 2.63 38 54 0 37 0.00 37 55 0 42 0.00 42 56 0 42 0.00 42 57 1 45 2.17 46 58 0 37 0.00 37 59 1 34 2.86 35 60 1 33 2.94 34 61 1 31 3.12 32 62 0 35 0.00 35 63 0 26 0.00 26 64 0 28 0.00 28 65 0 31 0.00 31 66 0 30 0.00 30 67 0 32 0.00 32 68 0 30 0.00 30 69 0 33 0.00 33 70 0 23 0.00 23 71 1 34 2.86 35 72 1 22 4.35 23 73 0 23 0.00 23 74 1 20 4.76 21 75 0 27 0.00 27 76 2 21 8.70 23 77 1 19 5.00 20 78 0 25 0.00 25 79 0 26 0.00 26 80 1 18 5.26 19 81 0 8 0.00 8 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 66 434 13.20 500 2 66 425 13.44 491 3 95 389 19.63 484 4 49 443 9.96 492 5 60 365 14.12 425 6 47 366 11.38 413 7 61 366 14.29 427 8 50 326 13.30 376 9 53 364 12.71 417 10 41 343 10.68 384 11 56 354 13.66 410 12 47 379 11.03 426 13 56 360 13.46 416 14 50 358 12.25 408 15 47 374 11.16 421 16 46 376 10.90 422 17 43 334 11.41 377 18 38 330 10.33 368 19 40 299 11.80 339 20 32 297 9.73 329 21 44 334 11.64 378 22 33 295 10.06 328 23 40 269 12.94 309 24 29 305 8.68 334 25 51 255 16.67 306 26 33 268 10.96 301 27 30 262 10.27 292 28 28 232 10.77 260 29 38 233 14.02 271 30 18 227 7.35 245 31 35 207 14.46 242 32 27 256 9.54 283 33 26 218 10.66 244 34 19 225 7.79 244 35 22 214 9.32 236 36 22 214 9.32 236 37 26 204 11.30 230 38 15 196 7.11 211 39 30 189 13.70 219 40 21 200 9.50 221 41 20 186 9.71 206 42 19 179 9.60 198 43 23 171 11.86 194 44 18 169 9.63 187 45 25 162 13.37 187 46 18 172 9.47 190 47 16 139 10.32 155 48 13 134 8.84 147 49 19 172 9.95 191 50 11 153 6.71 164 51 20 152 11.63 172 52 15 163 8.43 178 53 22 139 13.66 161 54 8 161 4.73 169 55 22 109 16.79 131 56 19 139 12.03 158 57 21 112 15.79 133 58 10 109 8.40 119 59 13 117 10.00 130 60 10 105 8.70 115 61 17 115 12.88 132 62 11 114 8.80 125 63 16 107 13.01 123 64 14 107 11.57 121 65 16 118 11.94 134 66 10 103 8.85 113 67 16 98 14.04 114 68 11 89 11.00 100 69 16 88 15.38 104 70 9 90 9.09 99 71 14 73 16.09 87 72 10 69 12.66 79 73 16 84 16.00 100 74 7 78 8.24 85 75 19 82 18.81 101 76 8 78 9.30 86 77 15 54 21.74 69 78 8 55 12.70 63 79 9 86 9.47 95 80 6 70 7.89 76 81 5 27 15.62 32