/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH09_28_S17_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH09_28_S17_L001_R2_001_val_2.fq.gz
Data processed at 13:43 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
10820
Pairs without alignments under any condition
24913
Pairs that did not map uniquely
4267
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
306228
Methylated C's in CpG context
33551
Methylated C's in CHG context
2155
Methylated C's in CHH context
31153
Methylated C's in Unknown context
396
Unmethylated C's in CpG context
13846
Unmethylated C's in CHG context
59723
Unmethylated C's in CHH context
165800
Unmethylated C's in Unknown context
771
Percentage methylation (CpG context)
70.8%
Percentage methylation (CHG context)
3.5%
Percentage methylation (CHH context)
15.8%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5404
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5416
original bottom strand
Deduplication
Alignments analysed
10820
Unique alignments
8665
Duplicates removed
2155
Duplicated alignments were found at 1626 different positions
