/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH09_13_S16_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH09_13_S16_L001_R2_001_val_2.fq.gz
Data processed at 13:43 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
12161
Pairs without alignments under any condition
21599
Pairs that did not map uniquely
6240
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
357895
Methylated C's in CpG context
21379
Methylated C's in CHG context
1799
Methylated C's in CHH context
48791
Methylated C's in Unknown context
508
Unmethylated C's in CpG context
19792
Unmethylated C's in CHG context
59742
Unmethylated C's in CHH context
206392
Unmethylated C's in Unknown context
818
Percentage methylation (CpG context)
51.9%
Percentage methylation (CHG context)
2.9%
Percentage methylation (CHH context)
19.1%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
6138
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
6023
original bottom strand
Deduplication
Alignments analysed
12161
Unique alignments
9873
Duplicates removed
2288
Duplicated alignments were found at 1699 different positions
