CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 198 98 66.89 296 2 199 121 62.19 320 3 178 87 67.17 265 4 181 82 68.82 263 5 184 87 67.90 271 6 187 79 70.30 266 7 186 83 69.14 269 8 170 79 68.27 249 9 175 86 67.05 261 10 173 81 68.11 254 11 199 91 68.62 290 12 197 86 69.61 283 13 198 82 70.71 280 14 191 89 68.21 280 15 177 100 63.90 277 16 208 89 70.03 297 17 192 92 67.61 284 18 178 81 68.73 259 19 189 77 71.05 266 20 204 67 75.28 271 21 190 88 68.35 278 22 214 87 71.10 301 23 217 89 70.92 306 24 223 71 75.85 294 25 191 73 72.35 264 26 198 94 67.81 292 27 193 83 69.93 276 28 204 80 71.83 284 29 198 84 70.21 282 30 203 69 74.63 272 31 192 88 68.57 280 32 222 71 75.77 293 33 145 90 61.70 235 34 196 80 71.01 276 35 195 82 70.40 277 36 180 71 71.71 251 37 169 79 68.15 248 38 187 76 71.10 263 39 153 64 70.51 217 40 176 63 73.64 239 41 168 76 68.85 244 42 150 67 69.12 217 43 158 70 69.30 228 44 151 75 66.81 226 45 172 58 74.78 230 46 145 63 69.71 208 47 149 61 70.95 210 48 145 70 67.44 215 49 143 58 71.14 201 50 136 59 69.74 195 51 116 71 62.03 187 52 113 70 61.75 183 53 137 50 73.26 187 54 124 57 68.51 181 55 120 61 66.30 181 56 119 69 63.30 188 57 130 54 70.65 184 58 126 55 69.61 181 59 127 41 75.60 168 60 105 60 63.64 165 61 80 48 62.50 128 62 112 59 65.50 171 63 109 52 67.70 161 64 86 38 69.35 124 65 103 45 69.59 148 66 88 50 63.77 138 67 74 41 64.35 115 68 99 42 70.21 141 69 69 48 58.97 117 70 69 39 63.89 108 71 86 38 69.35 124 72 75 40 65.22 115 73 81 32 71.68 113 74 69 42 62.16 111 75 75 32 70.09 107 76 63 34 64.95 97 77 67 28 70.53 95 78 55 34 61.80 89 79 55 20 73.33 75 80 52 13 80.00 65 81 35 26 57.38 61 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 82 333 19.76 415 2 19 310 5.78 329 3 24 314 7.10 338 4 17 303 5.31 320 5 14 317 4.23 331 6 19 326 5.51 345 7 14 307 4.36 321 8 11 318 3.34 329 9 18 338 5.06 356 10 16 360 4.26 376 11 11 321 3.31 332 12 15 326 4.40 341 13 8 325 2.40 333 14 13 328 3.81 341 15 12 353 3.29 365 16 16 331 4.61 347 17 13 338 3.70 351 18 10 345 2.82 355 19 10 334 2.91 344 20 6 380 1.55 386 21 16 343 4.46 359 22 20 362 5.24 382 23 13 357 3.51 370 24 11 357 2.99 368 25 6 318 1.85 324 26 14 320 4.19 334 27 12 341 3.40 353 28 11 337 3.16 348 29 16 352 4.35 368 30 5 307 1.60 312 31 11 338 3.15 349 32 9 298 2.93 307 33 9 318 2.75 327 34 8 315 2.48 323 35 3 276 1.08 279 36 9 308 2.84 317 37 11 311 3.42 322 38 13 291 4.28 304 39 10 272 3.55 282 40 8 287 2.71 295 41 11 284 3.73 295 42 8 284 2.74 292 43 7 282 2.42 289 44 16 257 5.86 273 45 7 242 2.81 249 46 7 254 2.68 261 47 10 276 3.50 286 48 6 254 2.31 260 49 10 255 3.77 265 50 4 262 1.50 266 51 6 209 2.79 215 52 10 214 4.46 224 53 17 213 7.39 230 54 8 199 3.86 207 55 7 222 3.06 229 56 8 203 3.79 211 57 8 205 3.76 213 58 6 186 3.12 192 59 5 173 2.81 178 60 4 173 2.26 177 61 4 190 2.06 194 62 3 187 1.58 190 63 8 176 4.35 184 64 7 170 3.95 177 65 6 175 3.31 181 66 4 184 2.13 188 67 5 168 2.89 173 68 3 152 1.94 155 69 9 132 6.38 141 70 5 155 3.12 160 71 5 126 3.82 131 72 5 133 3.62 138 73 5 118 4.07 123 74 3 139 2.11 142 75 2 125 1.57 127 76 4 132 2.94 136 77 1 98 1.01 99 78 8 102 7.27 110 79 2 103 1.90 105 80 8 96 7.69 104 81 5 66 7.04 71 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 323 877 26.92 1200 2 236 963 19.68 1199 3 301 917 24.71 1218 4 331 922 26.42 1253 5 324 969 25.06 1293 6 272 965 21.99 1237 7 362 912 28.41 1274 8 262 944 21.72 1206 9 306 998 23.47 1304 10 363 912 28.47 1275 11 354 1005 26.05 1359 12 338 958 26.08 1296 13 330 987 25.06 1317 14 328 983 25.02 1311 15 342 988 25.71 1330 16 367 955 27.76 1322 17 338 1024 24.82 1362 18 369 977 27.41 1346 19 355 983 26.53 1338 20 349 1030 25.31 1379 21 334 1069 23.81 1403 22 356 988 26.49 1344 23 317 981 24.42 1298 24 341 949 26.43 1290 25 361 954 27.45 1315 26 373 951 28.17 1324 27 372 985 27.41 1357 28 337 954 26.10 1291 29 366 912 28.64 1278 30 363 955 27.54 1318 31 332 923 26.45 1255 32 358 938 27.62 1296 33 316 910 25.77 1226 34 328 872 27.33 1200 35 299 881 25.34 1180 36 337 855 28.27 1192 37 312 848 26.90 1160 38 311 831 27.23 1142 39 309 854 26.57 1163 40 300 867 25.71 1167 41 295 816 26.55 1111 42 275 833 24.82 1108 43 275 779 26.09 1054 44 278 740 27.31 1018 45 252 775 24.54 1027 46 260 752 25.69 1012 47 270 708 27.61 978 48 259 683 27.49 942 49 270 665 28.88 935 50 253 676 27.23 929 51 254 695 26.77 949 52 239 659 26.61 898 53 228 647 26.06 875 54 222 647 25.55 869 55 218 638 25.47 856 56 230 632 26.68 862 57 201 617 24.57 818 58 200 580 25.64 780 59 209 581 26.46 790 60 191 596 24.27 787 61 186 548 25.34 734 62 176 504 25.88 680 63 155 534 22.50 689 64 177 507 25.88 684 65 175 507 25.66 682 66 162 469 25.67 631 67 152 478 24.13 630 68 156 443 26.04 599 69 147 477 23.56 624 70 141 445 24.06 586 71 137 414 24.86 551 72 124 399 23.71 523 73 129 384 25.15 513 74 125 394 24.08 519 75 127 374 25.35 501 76 103 359 22.29 462 77 119 357 25.00 476 78 99 324 23.40 423 79 108 323 25.06 431 80 92 307 23.06 399 81 90 236 27.61 326 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 43 24 64.18 67 2 46 22 67.65 68 3 81 20 80.20 101 4 49 25 66.22 74 5 42 21 66.67 63 6 45 27 62.50 72 7 40 23 63.49 63 8 30 27 52.63 57 9 33 24 57.89 57 10 31 23 57.41 54 11 32 18 64.00 50 12 36 23 61.02 59 13 27 26 50.94 53 14 44 24 64.71 68 15 23 22 51.11 45 16 28 11 71.79 39 17 36 21 63.16 57 18 17 13 56.67 30 19 20 25 44.44 45 20 26 15 63.41 41 21 21 12 63.64 33 22 16 10 61.54 26 23 34 12 73.91 46 24 23 8 74.19 31 25 21 14 60.00 35 26 20 8 71.43 28 27 27 14 65.85 41 28 21 8 72.41 29 29 21 16 56.76 37 30 24 11 68.57 35 31 15 14 51.72 29 32 11 8 57.89 19 33 17 8 68.00 25 34 17 9 65.38 26 35 14 15 48.28 29 36 10 9 52.63 19 37 14 8 63.64 22 38 10 12 45.45 22 39 11 4 73.33 15 40 14 8 63.64 22 41 11 4 73.33 15 42 14 7 66.67 21 43 11 11 50.00 22 44 18 6 75.00 24 45 13 3 81.25 16 46 8 7 53.33 15 47 8 4 66.67 12 48 7 4 63.64 11 49 6 6 50.00 12 50 5 12 29.41 17 51 9 4 69.23 13 52 10 7 58.82 17 53 9 11 45.00 20 54 4 3 57.14 7 55 8 5 61.54 13 56 4 1 80.00 5 57 5 4 55.56 9 58 7 4 63.64 11 59 7 4 63.64 11 60 7 1 87.50 8 61 6 4 60.00 10 62 3 1 75.00 4 63 3 4 42.86 7 64 7 4 63.64 11 65 6 2 75.00 8 66 8 3 72.73 11 67 2 4 33.33 6 68 3 2 60.00 5 69 6 0 100.00 6 70 4 5 44.44 9 71 3 1 75.00 4 72 1 3 25.00 4 73 2 3 40.00 5 74 1 2 33.33 3 75 2 0 100.00 2 76 1 3 25.00 4 77 1 1 50.00 2 78 3 0 100.00 3 79 2 2 50.00 4 80 3 6 33.33 9 81 1 1 50.00 2 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 11 79 12.22 90 2 12 85 12.37 97 3 29 105 21.64 134 4 2 112 1.75 114 5 3 80 3.61 83 6 4 75 5.06 79 7 4 90 4.26 94 8 4 84 4.55 88 9 3 78 3.70 81 10 4 84 4.55 88 11 1 60 1.64 61 12 3 76 3.80 79 13 1 81 1.22 82 14 3 74 3.90 77 15 5 69 6.76 74 16 2 54 3.57 56 17 2 67 2.90 69 18 2 57 3.39 59 19 1 45 2.17 46 20 1 49 2.00 50 21 0 64 0.00 64 22 1 44 2.22 45 23 3 46 6.12 49 24 1 47 2.08 48 25 1 45 2.17 46 26 3 39 7.14 42 27 0 43 0.00 43 28 0 43 0.00 43 29 0 21 0.00 21 30 2 40 4.76 42 31 0 29 0.00 29 32 1 45 2.17 46 33 0 32 0.00 32 34 1 22 4.35 23 35 0 32 0.00 32 36 2 33 5.71 35 37 1 27 3.57 28 38 1 21 4.55 22 39 0 23 0.00 23 40 1 21 4.55 22 41 0 15 0.00 15 42 1 26 3.70 27 43 0 21 0.00 21 44 1 26 3.70 27 45 0 27 0.00 27 46 1 16 5.88 17 47 1 13 7.14 14 48 0 26 0.00 26 49 1 22 4.35 23 50 1 13 7.14 14 51 2 18 10.00 20 52 1 10 9.09 11 53 0 17 0.00 17 54 0 16 0.00 16 55 0 14 0.00 14 56 1 13 7.14 14 57 0 8 0.00 8 58 0 9 0.00 9 59 0 8 0.00 8 60 0 15 0.00 15 61 0 10 0.00 10 62 0 8 0.00 8 63 0 15 0.00 15 64 1 6 14.29 7 65 0 7 0.00 7 66 0 4 0.00 4 67 0 11 0.00 11 68 1 5 16.67 6 69 0 7 0.00 7 70 0 11 0.00 11 71 0 6 0.00 6 72 0 6 0.00 6 73 1 9 10.00 10 74 0 5 0.00 5 75 0 9 0.00 9 76 1 8 11.11 9 77 0 2 0.00 2 78 0 4 0.00 4 79 1 4 20.00 5 80 0 4 0.00 4 81 0 3 0.00 3 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 97 314 23.60 411 2 72 313 18.70 385 3 119 285 29.46 404 4 54 309 14.88 363 5 102 288 26.15 390 6 51 266 16.09 317 7 92 262 25.99 354 8 62 255 19.56 317 9 92 236 28.05 328 10 65 261 19.94 326 11 87 245 26.20 332 12 59 221 21.07 280 13 85 226 27.33 311 14 70 222 23.97 292 15 80 235 25.40 315 16 56 228 19.72 284 17 82 185 30.71 267 18 44 205 17.67 249 19 78 169 31.58 247 20 42 168 20.00 210 21 80 160 33.33 240 22 40 174 18.69 214 23 78 128 37.86 206 24 37 130 22.16 167 25 69 142 32.70 211 26 39 130 23.08 169 27 67 134 33.33 201 28 34 131 20.61 165 29 62 112 35.63 174 30 40 116 25.64 156 31 57 126 31.15 183 32 28 104 21.21 132 33 59 124 32.24 183 34 33 117 22.00 150 35 56 100 35.90 156 36 30 99 23.26 129 37 50 125 28.57 175 38 30 94 24.19 124 39 52 101 33.99 153 40 28 93 23.14 121 41 52 86 37.68 138 42 27 72 27.27 99 43 42 79 34.71 121 44 25 61 29.07 86 45 47 71 39.83 118 46 25 69 26.60 94 47 42 74 36.21 116 48 26 69 27.37 95 49 40 61 39.60 101 50 25 60 29.41 85 51 37 60 38.14 97 52 23 57 28.75 80 53 35 44 44.30 79 54 25 55 31.25 80 55 32 48 40.00 80 56 20 39 33.90 59 57 33 51 39.29 84 58 21 53 28.38 74 59 41 39 51.25 80 60 22 44 33.33 66 61 34 54 38.64 88 62 27 40 40.30 67 63 37 43 46.25 80 64 22 42 34.38 64 65 28 40 41.18 68 66 17 35 32.69 52 67 32 31 50.79 63 68 20 35 36.36 55 69 30 34 46.88 64 70 19 34 35.85 53 71 30 40 42.86 70 72 19 29 39.58 48 73 28 29 49.12 57 74 16 23 41.03 39 75 26 29 47.27 55 76 16 28 36.36 44 77 27 27 50.00 54 78 11 24 31.43 35 79 23 22 51.11 45 80 13 23 36.11 36 81 17 12 58.62 29