/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH09_02_S15_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH09_02_S15_L001_R2_001_val_2.fq.gz
Data processed at 13:43 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
11594
Pairs without alignments under any condition
21966
Pairs that did not map uniquely
6440
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
298641
Methylated C's in CpG context
30191
Methylated C's in CHG context
2027
Methylated C's in CHH context
46592
Methylated C's in Unknown context
567
Unmethylated C's in CpG context
13565
Unmethylated C's in CHG context
53212
Unmethylated C's in CHH context
153054
Unmethylated C's in Unknown context
881
Percentage methylation (CpG context)
69.0%
Percentage methylation (CHG context)
3.7%
Percentage methylation (CHH context)
23.3%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5847
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5747
original bottom strand
Deduplication
Alignments analysed
11594
Unique alignments
9368
Duplicates removed
2226
Duplicated alignments were found at 1649 different positions
