/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH07_24_S14_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH07_24_S14_L001_R2_001_val_2.fq.gz
Data processed at 13:43 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
8617
Pairs without alignments under any condition
24320
Pairs that did not map uniquely
7063
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
220377
Methylated C's in CpG context
2042
Methylated C's in CHG context
937
Methylated C's in CHH context
33312
Methylated C's in Unknown context
359
Unmethylated C's in CpG context
23000
Unmethylated C's in CHG context
33654
Unmethylated C's in CHH context
127432
Unmethylated C's in Unknown context
696
Percentage methylation (CpG context)
8.2%
Percentage methylation (CHG context)
2.7%
Percentage methylation (CHH context)
20.7%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
4224
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
4393
original bottom strand
Deduplication
Alignments analysed
8617
Unique alignments
7019
Duplicates removed
1598
Duplicated alignments were found at 1169 different positions
