/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH07_11_S13_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH07_11_S13_L001_R2_001_val_2.fq.gz
Data processed at 13:43 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
7401
Pairs without alignments under any condition
27194
Pairs that did not map uniquely
5405
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
194680
Methylated C's in CpG context
2160
Methylated C's in CHG context
1042
Methylated C's in CHH context
30653
Methylated C's in Unknown context
384
Unmethylated C's in CpG context
21368
Unmethylated C's in CHG context
30637
Unmethylated C's in CHH context
108820
Unmethylated C's in Unknown context
642
Percentage methylation (CpG context)
9.2%
Percentage methylation (CHG context)
3.3%
Percentage methylation (CHH context)
22.0%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
3709
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
3692
original bottom strand
Deduplication
Alignments analysed
7401
Unique alignments
5827
Duplicates removed
1574
Duplicated alignments were found at 1140 different positions
