CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 201 105 65.69 306 2 208 112 65.00 320 3 169 110 60.57 279 4 201 101 66.56 302 5 187 101 64.93 288 6 228 81 73.79 309 7 179 106 62.81 285 8 191 113 62.83 304 9 200 97 67.34 297 10 168 105 61.54 273 11 198 109 64.50 307 12 200 92 68.49 292 13 189 94 66.78 283 14 198 102 66.00 300 15 203 115 63.84 318 16 217 96 69.33 313 17 199 118 62.78 317 18 243 106 69.63 349 19 189 92 67.26 281 20 210 88 70.47 298 21 189 110 63.21 299 22 212 107 66.46 319 23 213 112 65.54 325 24 199 118 62.78 317 25 226 98 69.75 324 26 213 107 66.56 320 27 192 99 65.98 291 28 215 99 68.47 314 29 194 104 65.10 298 30 201 93 68.37 294 31 202 94 68.24 296 32 196 100 66.22 296 33 207 91 69.46 298 34 181 93 66.06 274 35 221 84 72.46 305 36 200 92 68.49 292 37 182 82 68.94 264 38 192 101 65.53 293 39 197 110 64.17 307 40 178 99 64.26 277 41 159 83 65.70 242 42 191 106 64.31 297 43 173 89 66.03 262 44 190 83 69.60 273 45 187 76 71.10 263 46 173 78 68.92 251 47 165 84 66.27 249 48 161 92 63.64 253 49 155 71 68.58 226 50 159 78 67.09 237 51 173 71 70.90 244 52 168 75 69.14 243 53 147 56 72.41 203 54 151 74 67.11 225 55 151 63 70.56 214 56 165 65 71.74 230 57 176 67 72.43 243 58 162 78 67.50 240 59 135 69 66.18 204 60 155 55 73.81 210 61 120 62 65.93 182 62 156 62 71.56 218 63 132 62 68.04 194 64 109 63 63.37 172 65 122 70 63.54 192 66 112 56 66.67 168 67 121 63 65.76 184 68 107 54 66.46 161 69 120 42 74.07 162 70 108 63 63.16 171 71 125 56 69.06 181 72 122 52 70.11 174 73 117 49 70.48 166 74 107 59 64.46 166 75 114 51 69.09 165 76 104 40 72.22 144 77 100 36 73.53 136 78 102 40 71.83 142 79 103 43 70.55 146 80 78 46 62.90 124 81 76 23 76.77 99 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 58 340 14.57 398 2 20 347 5.45 367 3 17 390 4.18 407 4 12 328 3.53 340 5 22 390 5.34 412 6 17 361 4.50 378 7 16 351 4.36 367 8 8 366 2.14 374 9 10 331 2.93 341 10 14 346 3.89 360 11 14 349 3.86 363 12 6 371 1.59 377 13 10 341 2.85 351 14 8 371 2.11 379 15 8 373 2.10 381 16 14 358 3.76 372 17 11 363 2.94 374 18 8 387 2.03 395 19 7 341 2.01 348 20 6 378 1.56 384 21 11 399 2.68 410 22 15 364 3.96 379 23 9 396 2.22 405 24 10 375 2.60 385 25 8 375 2.09 383 26 13 366 3.43 379 27 10 357 2.72 367 28 8 347 2.25 355 29 4 326 1.21 330 30 5 352 1.40 357 31 7 354 1.94 361 32 7 356 1.93 363 33 4 348 1.14 352 34 12 359 3.23 371 35 11 310 3.43 321 36 10 341 2.85 351 37 15 354 4.07 369 38 12 347 3.34 359 39 10 328 2.96 338 40 7 315 2.17 322 41 10 360 2.70 370 42 8 321 2.43 329 43 14 318 4.22 332 44 12 305 3.79 317 45 5 299 1.64 304 46 6 270 2.17 276 47 12 291 3.96 303 48 12 314 3.68 326 49 7 274 2.49 281 50 11 259 4.07 270 51 5 298 1.65 303 52 9 269 3.24 278 53 4 288 1.37 292 54 10 281 3.44 291 55 13 257 4.81 270 56 6 280 2.10 286 57 4 274 1.44 278 58 7 256 2.66 263 59 9 265 3.28 274 60 8 249 3.11 257 61 7 233 2.92 240 62 6 236 2.48 242 63 10 210 4.55 220 64 10 217 4.41 227 65 3 223 1.33 226 66 8 199 3.86 207 67 11 204 5.12 215 68 2 216 0.92 218 69 9 195 4.41 204 70 3 208 1.42 211 71 7 226 3.00 233 72 3 190 1.55 193 73 7 195 3.47 202 74 3 171 1.72 174 75 4 177 2.21 181 76 7 192 3.52 199 77 8 170 4.49 178 78 5 156 3.11 161 79 5 155 3.12 160 80 6 145 3.97 151 81 8 93 7.92 101 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 292 878 24.96 1170 2 259 980 20.90 1239 3 275 928 22.86 1203 4 254 995 20.34 1249 5 265 1001 20.93 1266 6 220 926 19.20 1146 7 261 901 22.46 1162 8 211 981 17.70 1192 9 258 938 21.57 1196 10 240 908 20.91 1148 11 279 967 22.39 1246 12 248 970 20.36 1218 13 266 1008 20.88 1274 14 264 1014 20.66 1278 15 276 1028 21.17 1304 16 235 1011 18.86 1246 17 260 1009 20.49 1269 18 254 1038 19.66 1292 19 278 1037 21.14 1315 20 255 1099 18.83 1354 21 250 1037 19.43 1287 22 259 1005 20.49 1264 23 244 1029 19.17 1273 24 269 1090 19.79 1359 25 292 945 23.61 1237 26 266 979 21.37 1245 27 254 1024 19.87 1278 28 275 995 21.65 1270 29 276 993 21.75 1269 30 262 1010 20.60 1272 31 243 990 19.71 1233 32 250 996 20.06 1246 33 244 965 20.18 1209 34 248 944 20.81 1192 35 233 982 19.18 1215 36 240 985 19.59 1225 37 220 941 18.95 1161 38 236 968 19.60 1204 39 219 937 18.94 1156 40 190 910 17.27 1100 41 218 895 19.59 1113 42 196 883 18.16 1079 43 223 863 20.53 1086 44 202 825 19.67 1027 45 203 822 19.80 1025 46 194 817 19.19 1011 47 206 830 19.88 1036 48 180 853 17.42 1033 49 194 845 18.67 1039 50 168 808 17.21 976 51 161 815 16.50 976 52 179 813 18.04 992 53 159 788 16.79 947 54 177 773 18.63 950 55 169 757 18.25 926 56 160 713 18.33 873 57 159 736 17.77 895 58 160 680 19.05 840 59 157 728 17.74 885 60 156 685 18.55 841 61 142 692 17.03 834 62 134 694 16.18 828 63 125 726 14.69 851 64 132 644 17.01 776 65 128 669 16.06 797 66 113 590 16.07 703 67 120 666 15.27 786 68 114 636 15.20 750 69 110 640 14.67 750 70 103 570 15.30 673 71 114 582 16.38 696 72 105 557 15.86 662 73 93 538 14.74 631 74 95 556 14.59 651 75 100 538 15.67 638 76 99 521 15.97 620 77 85 526 13.91 611 78 81 526 13.34 607 79 100 485 17.09 585 80 70 449 13.49 519 81 56 352 13.73 408 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 87 44 66.41 131 2 76 45 62.81 121 3 104 34 75.36 138 4 62 52 54.39 114 5 62 35 63.92 97 6 70 37 65.42 107 7 75 59 55.97 134 8 65 51 56.03 116 9 60 30 66.67 90 10 58 38 60.42 96 11 62 36 63.27 98 12 75 55 57.69 130 13 65 35 65.00 100 14 64 30 68.09 94 15 63 30 67.74 93 16 59 35 62.77 94 17 50 31 61.73 81 18 64 36 64.00 100 19 56 37 60.22 93 20 52 33 61.18 85 21 43 45 48.86 88 22 52 25 67.53 77 23 71 30 70.30 101 24 52 21 71.23 73 25 42 23 64.62 65 26 66 16 80.49 82 27 50 35 58.82 85 28 37 24 60.66 61 29 48 29 62.34 77 30 48 24 66.67 72 31 38 21 64.41 59 32 45 18 71.43 63 33 46 27 63.01 73 34 44 25 63.77 69 35 47 18 72.31 65 36 35 31 53.03 66 37 49 24 67.12 73 38 39 18 68.42 57 39 37 15 71.15 52 40 27 20 57.45 47 41 35 13 72.92 48 42 30 24 55.56 54 43 29 10 74.36 39 44 33 16 67.35 49 45 28 16 63.64 44 46 29 14 67.44 43 47 29 16 64.44 45 48 30 13 69.77 43 49 32 11 74.42 43 50 24 7 77.42 31 51 24 9 72.73 33 52 33 17 66.00 50 53 25 11 69.44 36 54 20 12 62.50 32 55 28 6 82.35 34 56 20 8 71.43 28 57 24 8 75.00 32 58 19 7 73.08 26 59 25 15 62.50 40 60 27 15 64.29 42 61 17 14 54.84 31 62 13 10 56.52 23 63 28 7 80.00 35 64 26 7 78.79 33 65 18 10 64.29 28 66 17 8 68.00 25 67 16 1 94.12 17 68 17 5 77.27 22 69 15 10 60.00 25 70 22 12 64.71 34 71 17 4 80.95 21 72 10 3 76.92 13 73 12 8 60.00 20 74 10 5 66.67 15 75 12 4 75.00 16 76 11 6 64.71 17 77 11 8 57.89 19 78 13 8 61.90 21 79 13 3 81.25 16 80 13 4 76.47 17 81 5 2 71.43 7 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 3 141 2.08 144 2 9 164 5.20 173 3 23 163 12.37 186 4 4 170 2.30 174 5 0 160 0.00 160 6 1 140 0.71 141 7 3 133 2.21 136 8 5 156 3.11 161 9 4 121 3.20 125 10 7 119 5.56 126 11 1 131 0.76 132 12 4 140 2.78 144 13 7 135 4.93 142 14 2 108 1.82 110 15 1 131 0.76 132 16 1 97 1.02 98 17 2 112 1.75 114 18 5 99 4.81 104 19 2 120 1.64 122 20 3 121 2.42 124 21 1 97 1.02 98 22 2 96 2.04 98 23 1 90 1.10 91 24 2 83 2.35 85 25 3 88 3.30 91 26 2 95 2.06 97 27 2 87 2.25 89 28 0 80 0.00 80 29 2 82 2.38 84 30 0 92 0.00 92 31 2 74 2.63 76 32 0 80 0.00 80 33 2 60 3.23 62 34 0 63 0.00 63 35 0 77 0.00 77 36 1 74 1.33 75 37 3 55 5.17 58 38 1 82 1.20 83 39 3 58 4.92 61 40 1 62 1.59 63 41 1 57 1.72 58 42 1 69 1.43 70 43 1 59 1.67 60 44 0 61 0.00 61 45 0 54 0.00 54 46 1 51 1.92 52 47 0 57 0.00 57 48 1 56 1.75 57 49 0 39 0.00 39 50 0 51 0.00 51 51 0 50 0.00 50 52 1 38 2.56 39 53 4 41 8.89 45 54 1 40 2.44 41 55 1 43 2.27 44 56 0 52 0.00 52 57 0 32 0.00 32 58 0 29 0.00 29 59 0 29 0.00 29 60 0 42 0.00 42 61 0 40 0.00 40 62 0 43 0.00 43 63 0 23 0.00 23 64 0 24 0.00 24 65 1 30 3.23 31 66 0 36 0.00 36 67 1 45 2.17 46 68 0 29 0.00 29 69 0 22 0.00 22 70 1 43 2.27 44 71 1 27 3.57 28 72 1 21 4.55 22 73 0 23 0.00 23 74 0 20 0.00 20 75 0 26 0.00 26 76 1 19 5.00 20 77 0 19 0.00 19 78 0 26 0.00 26 79 0 20 0.00 20 80 1 25 3.85 26 81 0 8 0.00 8 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 75 452 14.23 527 2 68 434 13.55 502 3 95 453 17.34 548 4 60 470 11.32 530 5 82 430 16.02 512 6 61 402 13.17 463 7 79 417 15.93 496 8 64 429 12.98 493 9 66 417 13.66 483 10 55 391 12.33 446 11 60 342 14.93 402 12 56 365 13.30 421 13 66 347 15.98 413 14 51 368 12.17 419 15 56 387 12.64 443 16 40 378 9.57 418 17 56 324 14.74 380 18 42 344 10.88 386 19 53 305 14.80 358 20 36 303 10.62 339 21 44 295 12.98 339 22 39 311 11.14 350 23 49 274 15.17 323 24 32 263 10.85 295 25 48 272 15.00 320 26 39 237 14.13 276 27 49 253 16.23 302 28 32 278 10.32 310 29 43 260 14.19 303 30 31 252 10.95 283 31 37 261 12.42 298 32 28 224 11.11 252 33 41 228 15.24 269 34 31 263 10.54 294 35 40 201 16.60 241 36 25 202 11.01 227 37 38 233 14.02 271 38 30 183 14.08 213 39 34 210 13.93 244 40 26 221 10.53 247 41 31 189 14.09 220 42 27 192 12.33 219 43 29 170 14.57 199 44 21 167 11.17 188 45 25 157 13.74 182 46 23 166 12.17 189 47 29 150 16.20 179 48 25 173 12.63 198 49 21 159 11.67 180 50 19 154 10.98 173 51 28 147 16.00 175 52 17 144 10.56 161 53 29 131 18.12 160 54 19 144 11.66 163 55 26 136 16.05 162 56 21 139 13.12 160 57 25 130 16.13 155 58 20 132 13.16 152 59 25 123 16.89 148 60 18 108 14.29 126 61 22 112 16.42 134 62 13 120 9.77 133 63 19 107 15.08 126 64 18 98 15.52 116 65 20 93 17.70 113 66 15 102 12.82 117 67 16 97 14.16 113 68 17 95 15.18 112 69 21 82 20.39 103 70 19 84 18.45 103 71 18 74 19.57 92 72 13 93 12.26 106 73 15 72 17.24 87 74 20 68 22.73 88 75 15 76 16.48 91 76 17 75 18.48 92 77 18 79 18.56 97 78 12 69 14.81 81 79 18 72 20.00 90 80 11 61 15.28 72 81 11 27 28.95 38