/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH07_06_S12_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH07_06_S12_L001_R2_001_val_2.fq.gz
Data processed at 13:43 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
11241
Pairs without alignments under any condition
23687
Pairs that did not map uniquely
5072
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
324742
Methylated C's in CpG context
34758
Methylated C's in CHG context
1840
Methylated C's in CHH context
36921
Methylated C's in Unknown context
456
Unmethylated C's in CpG context
16926
Unmethylated C's in CHG context
61450
Unmethylated C's in CHH context
172847
Unmethylated C's in Unknown context
773
Percentage methylation (CpG context)
67.3%
Percentage methylation (CHG context)
2.9%
Percentage methylation (CHH context)
17.6%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5682
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5559
original bottom strand
Deduplication
Alignments analysed
11241
Unique alignments
8923
Duplicates removed
2318
Duplicated alignments were found at 1716 different positions
