CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 239 77 75.63 316 2 306 92 76.88 398 3 243 98 71.26 341 4 250 108 69.83 358 5 249 99 71.55 348 6 240 100 70.59 340 7 231 81 74.04 312 8 253 94 72.91 347 9 258 83 75.66 341 10 250 108 69.83 358 11 287 96 74.93 383 12 279 86 76.44 365 13 262 109 70.62 371 14 241 95 71.73 336 15 270 80 77.14 350 16 262 100 72.38 362 17 259 66 79.69 325 18 272 88 75.56 360 19 257 78 76.72 335 20 245 74 76.80 319 21 234 100 70.06 334 22 285 96 74.80 381 23 265 85 75.71 350 24 263 90 74.50 353 25 246 79 75.69 325 26 235 71 76.80 306 27 243 78 75.70 321 28 278 93 74.93 371 29 265 84 75.93 349 30 217 79 73.31 296 31 241 78 75.55 319 32 244 93 72.40 337 33 243 77 75.94 320 34 233 95 71.04 328 35 249 87 74.11 336 36 243 72 77.14 315 37 222 77 74.25 299 38 239 98 70.92 337 39 216 73 74.74 289 40 210 74 73.94 284 41 229 79 74.35 308 42 186 76 70.99 262 43 193 72 72.83 265 44 206 70 74.64 276 45 240 60 80.00 300 46 202 97 67.56 299 47 203 66 75.46 269 48 183 67 73.20 250 49 176 67 72.43 243 50 212 78 73.10 290 51 177 75 70.24 252 52 169 58 74.45 227 53 149 62 70.62 211 54 173 57 75.22 230 55 145 59 71.08 204 56 178 54 76.72 232 57 146 58 71.57 204 58 142 53 72.82 195 59 149 59 71.63 208 60 165 48 77.46 213 61 137 65 67.82 202 62 135 60 69.23 195 63 123 45 73.21 168 64 142 56 71.72 198 65 144 43 77.01 187 66 125 52 70.62 177 67 125 62 66.84 187 68 108 45 70.59 153 69 90 45 66.67 135 70 130 43 75.14 173 71 117 41 74.05 158 72 111 46 70.70 157 73 94 29 76.42 123 74 114 35 76.51 149 75 105 35 75.00 140 76 101 32 75.94 133 77 105 35 75.00 140 78 74 29 71.84 103 79 81 32 71.68 113 80 66 26 71.74 92 81 49 24 67.12 73 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 79 367 17.71 446 2 25 367 6.38 392 3 21 365 5.44 386 4 18 389 4.42 407 5 18 403 4.28 421 6 24 346 6.49 370 7 15 409 3.54 424 8 11 414 2.59 425 9 19 371 4.87 390 10 14 409 3.31 423 11 14 436 3.11 450 12 15 434 3.34 449 13 14 456 2.98 470 14 9 411 2.14 420 15 10 407 2.40 417 16 11 402 2.66 413 17 9 386 2.28 395 18 16 412 3.74 428 19 9 429 2.05 438 20 14 388 3.48 402 21 8 451 1.74 459 22 17 466 3.52 483 23 14 381 3.54 395 24 12 367 3.17 379 25 12 411 2.84 423 26 6 402 1.47 408 27 11 444 2.42 455 28 12 388 3.00 400 29 15 371 3.89 386 30 13 391 3.22 404 31 10 405 2.41 415 32 9 407 2.16 416 33 21 367 5.41 388 34 12 423 2.76 435 35 11 383 2.79 394 36 7 347 1.98 354 37 8 372 2.11 380 38 9 352 2.49 361 39 5 381 1.30 386 40 12 375 3.10 387 41 9 332 2.64 341 42 13 349 3.59 362 43 12 327 3.54 339 44 12 333 3.48 345 45 11 342 3.12 353 46 10 305 3.17 315 47 6 314 1.88 320 48 9 337 2.60 346 49 8 328 2.38 336 50 7 282 2.42 289 51 11 292 3.63 303 52 5 268 1.83 273 53 8 301 2.59 309 54 5 294 1.67 299 55 11 266 3.97 277 56 6 272 2.16 278 57 4 268 1.47 272 58 9 242 3.59 251 59 3 253 1.17 256 60 5 220 2.22 225 61 5 246 1.99 251 62 9 203 4.25 212 63 7 231 2.94 238 64 8 188 4.08 196 65 8 224 3.45 232 66 10 218 4.39 228 67 5 201 2.43 206 68 4 179 2.19 183 69 5 203 2.40 208 70 9 205 4.21 214 71 5 177 2.75 182 72 6 177 3.28 183 73 12 191 5.91 203 74 5 159 3.05 164 75 4 184 2.13 188 76 8 186 4.12 194 77 7 140 4.76 147 78 3 143 2.05 146 79 10 144 6.49 154 80 6 135 4.26 141 81 3 86 3.37 89 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 350 896 28.09 1246 2 353 945 27.20 1298 3 349 980 26.26 1329 4 332 991 25.09 1323 5 312 999 23.80 1311 6 364 1021 26.28 1385 7 293 959 23.40 1252 8 337 963 25.92 1300 9 328 904 26.62 1232 10 362 947 27.65 1309 11 302 970 23.74 1272 12 331 1014 24.61 1345 13 339 988 25.55 1327 14 324 991 24.64 1315 15 325 1048 23.67 1373 16 318 1082 22.71 1400 17 328 1070 23.46 1398 18 360 1097 24.71 1457 19 362 1119 24.44 1481 20 343 1167 22.72 1510 21 327 1091 23.06 1418 22 344 1086 24.06 1430 23 338 1085 23.75 1423 24 359 1095 24.69 1454 25 329 1065 23.60 1394 26 365 1072 25.40 1437 27 316 1069 22.82 1385 28 337 1023 24.78 1360 29 323 1054 23.46 1377 30 325 1057 23.52 1382 31 313 1035 23.22 1348 32 310 993 23.79 1303 33 306 1012 23.22 1318 34 357 952 27.27 1309 35 274 990 21.68 1264 36 316 1006 23.90 1322 37 273 935 22.60 1208 38 304 952 24.20 1256 39 293 906 24.44 1199 40 292 889 24.72 1181 41 243 929 20.73 1172 42 266 868 23.46 1134 43 250 923 21.31 1173 44 254 914 21.75 1168 45 247 872 22.07 1119 46 256 835 23.46 1091 47 219 842 20.64 1061 48 247 856 22.39 1103 49 218 801 21.39 1019 50 240 799 23.10 1039 51 196 782 20.04 978 52 226 757 22.99 983 53 194 785 19.82 979 54 219 697 23.91 916 55 212 744 22.18 956 56 198 701 22.02 899 57 186 666 21.83 852 58 180 681 20.91 861 59 175 663 20.88 838 60 180 600 23.08 780 61 163 631 20.53 794 62 168 666 20.14 834 63 172 595 22.43 767 64 158 577 21.50 735 65 140 595 19.05 735 66 141 588 19.34 729 67 137 549 19.97 686 68 151 575 20.80 726 69 141 532 20.95 673 70 131 561 18.93 692 71 127 491 20.55 618 72 116 492 19.08 608 73 127 528 19.39 655 74 116 455 20.32 571 75 127 438 22.48 565 76 112 388 22.40 500 77 107 416 20.46 523 78 97 429 18.44 526 79 102 390 20.73 492 80 90 365 19.78 455 81 74 247 23.05 321 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 50 28 64.10 78 2 76 35 68.47 111 3 89 39 69.53 128 4 70 40 63.64 110 5 61 25 70.93 86 6 61 24 71.76 85 7 54 28 65.85 82 8 51 33 60.71 84 9 67 30 69.07 97 10 55 28 66.27 83 11 57 32 64.04 89 12 48 27 64.00 75 13 57 18 76.00 75 14 47 24 66.20 71 15 57 12 82.61 69 16 37 28 56.92 65 17 42 26 61.76 68 18 38 23 62.30 61 19 46 21 68.66 67 20 36 12 75.00 48 21 39 20 66.10 59 22 45 15 75.00 60 23 49 19 72.06 68 24 36 16 69.23 52 25 30 10 75.00 40 26 41 16 71.93 57 27 33 11 75.00 44 28 43 12 78.18 55 29 44 12 78.57 56 30 27 11 71.05 38 31 31 7 81.58 38 32 25 21 54.35 46 33 27 12 69.23 39 34 17 11 60.71 28 35 31 15 67.39 46 36 28 7 80.00 35 37 20 8 71.43 28 38 22 10 68.75 32 39 22 12 64.71 34 40 26 15 63.41 41 41 24 9 72.73 33 42 25 10 71.43 35 43 16 8 66.67 24 44 17 9 65.38 26 45 24 6 80.00 30 46 13 12 52.00 25 47 17 9 65.38 26 48 21 8 72.41 29 49 13 6 68.42 19 50 19 4 82.61 23 51 12 6 66.67 18 52 14 6 70.00 20 53 10 7 58.82 17 54 20 2 90.91 22 55 15 4 78.95 19 56 9 6 60.00 15 57 7 8 46.67 15 58 8 5 61.54 13 59 9 2 81.82 11 60 14 4 77.78 18 61 7 5 58.33 12 62 9 3 75.00 12 63 13 6 68.42 19 64 13 1 92.86 14 65 14 7 66.67 21 66 8 7 53.33 15 67 10 3 76.92 13 68 7 3 70.00 10 69 7 5 58.33 12 70 9 2 81.82 11 71 10 3 76.92 13 72 7 5 58.33 12 73 10 2 83.33 12 74 6 3 66.67 9 75 4 0 100.00 4 76 4 3 57.14 7 77 5 3 62.50 8 78 5 5 50.00 10 79 12 1 92.31 13 80 3 1 75.00 4 81 2 3 40.00 5 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 21 117 15.22 138 2 6 98 5.77 104 3 23 146 13.61 169 4 8 173 4.42 181 5 3 121 2.42 124 6 4 133 2.92 137 7 6 141 4.08 147 8 7 129 5.15 136 9 3 100 2.91 103 10 1 113 0.88 114 11 3 119 2.46 122 12 3 121 2.42 124 13 1 139 0.71 140 14 0 100 0.00 100 15 1 108 0.92 109 16 2 133 1.48 135 17 0 102 0.00 102 18 0 85 0.00 85 19 0 76 0.00 76 20 2 81 2.41 83 21 1 72 1.37 73 22 2 76 2.56 78 23 1 65 1.52 66 24 1 84 1.18 85 25 0 65 0.00 65 26 3 67 4.29 70 27 0 84 0.00 84 28 0 59 0.00 59 29 1 63 1.56 64 30 1 50 1.96 51 31 1 42 2.33 43 32 2 66 2.94 68 33 1 51 1.92 52 34 2 57 3.39 59 35 1 50 1.96 51 36 1 59 1.67 60 37 1 54 1.82 55 38 2 40 4.76 42 39 1 44 2.22 45 40 1 40 2.44 41 41 0 41 0.00 41 42 1 34 2.86 35 43 1 40 2.44 41 44 1 33 2.94 34 45 0 31 0.00 31 46 1 37 2.63 38 47 1 24 4.00 25 48 0 26 0.00 26 49 0 31 0.00 31 50 1 25 3.85 26 51 0 40 0.00 40 52 0 24 0.00 24 53 1 28 3.45 29 54 1 14 6.67 15 55 0 22 0.00 22 56 2 27 6.90 29 57 0 12 0.00 12 58 0 31 0.00 31 59 0 26 0.00 26 60 1 20 4.76 21 61 0 23 0.00 23 62 1 15 6.25 16 63 2 15 11.76 17 64 1 20 4.76 21 65 0 15 0.00 15 66 0 20 0.00 20 67 2 14 12.50 16 68 0 7 0.00 7 69 0 20 0.00 20 70 0 20 0.00 20 71 0 12 0.00 12 72 0 14 0.00 14 73 1 11 8.33 12 74 0 14 0.00 14 75 0 18 0.00 18 76 0 13 0.00 13 77 1 15 6.25 16 78 0 16 0.00 16 79 0 9 0.00 9 80 0 8 0.00 8 81 1 4 20.00 5 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 105 393 21.08 498 2 51 352 12.66 403 3 119 355 25.11 474 4 47 338 12.21 385 5 90 331 21.38 421 6 56 315 15.09 371 7 84 318 20.90 402 8 62 285 17.87 347 9 90 298 23.20 388 10 50 279 15.20 329 11 79 278 22.13 357 12 57 301 15.92 358 13 79 306 20.52 385 14 50 313 13.77 363 15 68 284 19.32 352 16 47 252 15.72 299 17 69 246 21.90 315 18 42 233 15.27 275 19 71 230 23.59 301 20 37 209 15.04 246 21 62 207 23.05 269 22 33 209 13.64 242 23 71 218 24.57 289 24 31 191 13.96 222 25 59 170 25.76 229 26 36 181 16.59 217 27 62 163 27.56 225 28 35 175 16.67 210 29 57 165 25.68 222 30 31 171 15.35 202 31 58 159 26.73 217 32 28 159 14.97 187 33 46 138 25.00 184 34 36 157 18.65 193 35 48 137 25.95 185 36 34 121 21.94 155 37 47 115 29.01 162 38 26 121 17.69 147 39 50 115 30.30 165 40 23 112 17.04 135 41 49 116 29.70 165 42 23 107 17.69 130 43 45 102 30.61 147 44 22 98 18.33 120 45 43 102 29.66 145 46 28 93 23.14 121 47 42 96 30.43 138 48 28 89 23.93 117 49 41 84 32.80 125 50 20 87 18.69 107 51 40 87 31.50 127 52 15 74 16.85 89 53 35 82 29.91 117 54 22 72 23.40 94 55 36 73 33.03 109 56 17 81 17.35 98 57 39 68 36.45 107 58 15 64 18.99 79 59 36 66 35.29 102 60 18 53 25.35 71 61 33 63 34.38 96 62 17 60 22.08 77 63 29 68 29.90 97 64 19 50 27.54 69 65 25 52 32.47 77 66 22 58 27.50 80 67 25 52 32.47 77 68 12 44 21.43 56 69 28 44 38.89 72 70 14 42 25.00 56 71 29 52 35.80 81 72 18 51 26.09 69 73 24 53 31.17 77 74 18 46 28.12 64 75 23 39 37.10 62 76 16 44 26.67 60 77 20 47 29.85 67 78 20 35 36.36 55 79 19 42 31.15 61 80 10 37 21.28 47 81 13 13 50.00 26