/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH05_24_S11_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH05_24_S11_L001_R2_001_val_2.fq.gz
Data processed at 13:43 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
12588
Pairs without alignments under any condition
21090
Pairs that did not map uniquely
6322
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
340319
Methylated C's in CpG context
40260
Methylated C's in CHG context
2150
Methylated C's in CHH context
46396
Methylated C's in Unknown context
483
Unmethylated C's in CpG context
14564
Unmethylated C's in CHG context
66283
Unmethylated C's in CHH context
170666
Unmethylated C's in Unknown context
845
Percentage methylation (CpG context)
73.4%
Percentage methylation (CHG context)
3.1%
Percentage methylation (CHH context)
21.4%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
6364
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
6224
original bottom strand
Deduplication
Alignments analysed
12588
Unique alignments
10151
Duplicates removed
2437
Duplicated alignments were found at 1798 different positions
