CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 185 100 64.91 285 2 190 76 71.43 266 3 145 109 57.09 254 4 178 73 70.92 251 5 173 91 65.53 264 6 158 95 62.45 253 7 170 82 67.46 252 8 160 86 65.04 246 9 181 95 65.58 276 10 167 100 62.55 267 11 174 91 65.66 265 12 171 88 66.02 259 13 168 92 64.62 260 14 176 85 67.43 261 15 179 72 71.31 251 16 201 88 69.55 289 17 168 93 64.37 261 18 168 85 66.40 253 19 167 68 71.06 235 20 167 81 67.34 248 21 202 93 68.47 295 22 176 92 65.67 268 23 157 88 64.08 245 24 162 75 68.35 237 25 171 89 65.77 260 26 191 85 69.20 276 27 198 78 71.74 276 28 162 65 71.37 227 29 180 95 65.45 275 30 157 86 64.61 243 31 166 86 65.87 252 32 161 99 61.92 260 33 177 85 67.56 262 34 170 80 68.00 250 35 148 65 69.48 213 36 184 91 66.91 275 37 139 62 69.15 201 38 163 97 62.69 260 39 167 67 71.37 234 40 172 88 66.15 260 41 164 66 71.30 230 42 166 92 64.34 258 43 161 58 73.52 219 44 145 78 65.02 223 45 146 65 69.19 211 46 155 68 69.51 223 47 130 77 62.80 207 48 145 54 72.86 199 49 124 72 63.27 196 50 111 75 59.68 186 51 121 61 66.48 182 52 160 80 66.67 240 53 122 74 62.24 196 54 148 76 66.07 224 55 143 52 73.33 195 56 112 60 65.12 172 57 121 73 62.37 194 58 128 49 72.32 177 59 121 56 68.36 177 60 107 57 65.24 164 61 109 47 69.87 156 62 123 61 66.85 184 63 123 52 70.29 175 64 99 57 63.46 156 65 101 51 66.45 152 66 107 54 66.46 161 67 93 58 61.59 151 68 117 50 70.06 167 69 99 47 67.81 146 70 85 41 67.46 126 71 84 60 58.33 144 72 89 41 68.46 130 73 107 45 70.39 152 74 80 50 61.54 130 75 88 47 65.19 135 76 101 39 72.14 140 77 91 40 69.47 131 78 82 48 63.08 130 79 73 38 65.77 111 80 74 39 65.49 113 81 66 27 70.97 93 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 28 337 7.67 365 2 20 326 5.78 346 3 29 346 7.73 375 4 17 327 4.94 344 5 17 316 5.11 333 6 23 364 5.94 387 7 10 338 2.87 348 8 14 347 3.88 361 9 11 337 3.16 348 10 15 355 4.05 370 11 15 317 4.52 332 12 16 358 4.28 374 13 9 353 2.49 362 14 11 313 3.40 324 15 8 381 2.06 389 16 15 341 4.21 356 17 19 351 5.14 370 18 13 365 3.44 378 19 11 348 3.06 359 20 9 354 2.48 363 21 17 355 4.57 372 22 8 339 2.31 347 23 16 350 4.37 366 24 9 343 2.56 352 25 14 365 3.69 379 26 12 369 3.15 381 27 8 346 2.26 354 28 13 321 3.89 334 29 7 346 1.98 353 30 15 353 4.08 368 31 19 318 5.64 337 32 16 363 4.22 379 33 9 372 2.36 381 34 9 350 2.51 359 35 11 365 2.93 376 36 5 304 1.62 309 37 9 360 2.44 369 38 14 311 4.31 325 39 14 314 4.27 328 40 10 284 3.40 294 41 5 309 1.59 314 42 9 339 2.59 348 43 11 332 3.21 343 44 10 297 3.26 307 45 9 271 3.21 280 46 6 291 2.02 297 47 10 293 3.30 303 48 8 299 2.61 307 49 6 296 1.99 302 50 10 278 3.47 288 51 5 297 1.66 302 52 10 269 3.58 279 53 9 284 3.07 293 54 9 278 3.14 287 55 13 239 5.16 252 56 9 250 3.47 259 57 5 248 1.98 253 58 6 245 2.39 251 59 8 237 3.27 245 60 5 266 1.85 271 61 7 223 3.04 230 62 5 246 1.99 251 63 7 199 3.40 206 64 9 232 3.73 241 65 12 216 5.26 228 66 8 211 3.65 219 67 8 199 3.86 207 68 6 202 2.88 208 69 5 194 2.51 199 70 3 215 1.38 218 71 10 183 5.18 193 72 8 182 4.21 190 73 7 173 3.89 180 74 1 171 0.58 172 75 6 179 3.24 185 76 7 182 3.70 189 77 3 158 1.86 161 78 2 163 1.21 165 79 4 158 2.47 162 80 10 138 6.76 148 81 5 117 4.10 122 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 349 869 28.65 1218 2 337 880 27.69 1217 3 327 886 26.96 1213 4 352 876 28.66 1228 5 286 866 24.83 1152 6 338 889 27.55 1227 7 329 838 28.19 1167 8 322 853 27.40 1175 9 347 868 28.56 1215 10 306 843 26.63 1149 11 333 866 27.77 1199 12 352 906 27.98 1258 13 332 910 26.73 1242 14 324 941 25.61 1265 15 334 929 26.44 1263 16 334 942 26.18 1276 17 328 952 25.62 1280 18 326 984 24.89 1310 19 372 924 28.70 1296 20 312 961 24.51 1273 21 367 1007 26.71 1374 22 344 992 25.75 1336 23 350 997 25.98 1347 24 341 1034 24.80 1375 25 366 959 27.62 1325 26 311 923 25.20 1234 27 335 1000 25.09 1335 28 340 934 26.69 1274 29 377 947 28.47 1324 30 353 998 26.13 1351 31 337 943 26.33 1280 32 310 930 25.00 1240 33 342 925 26.99 1267 34 308 924 25.00 1232 35 316 912 25.73 1228 36 285 890 24.26 1175 37 330 823 28.62 1153 38 270 921 22.67 1191 39 300 842 26.27 1142 40 320 892 26.40 1212 41 278 840 24.87 1118 42 283 900 23.92 1183 43 276 817 25.25 1093 44 280 838 25.04 1118 45 240 822 22.60 1062 46 250 813 23.52 1063 47 257 813 24.02 1070 48 255 802 24.12 1057 49 263 835 23.95 1098 50 219 803 21.43 1022 51 220 761 22.43 981 52 223 716 23.75 939 53 213 717 22.90 930 54 227 728 23.77 955 55 204 702 22.52 906 56 221 653 25.29 874 57 201 682 22.76 883 58 230 663 25.76 893 59 177 673 20.82 850 60 190 640 22.89 830 61 205 608 25.22 813 62 171 613 21.81 784 63 192 654 22.70 846 64 188 607 23.65 795 65 177 613 22.41 790 66 148 585 20.19 733 67 177 603 22.69 780 68 161 595 21.30 756 69 153 565 21.31 718 70 148 547 21.29 695 71 152 510 22.96 662 72 129 502 20.44 631 73 153 521 22.70 674 74 150 483 23.70 633 75 132 551 19.33 683 76 126 498 20.19 624 77 129 487 20.94 616 78 114 489 18.91 603 79 135 441 23.44 576 80 123 410 23.08 533 81 74 320 18.78 394 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 41 52 44.09 93 2 69 41 62.73 110 3 77 45 63.11 122 4 76 39 66.09 115 5 60 29 67.42 89 6 64 26 71.11 90 7 50 27 64.94 77 8 53 34 60.92 87 9 44 33 57.14 77 10 54 42 56.25 96 11 56 39 58.95 95 12 50 25 66.67 75 13 62 35 63.92 97 14 54 26 67.50 80 15 49 26 65.33 75 16 49 24 67.12 73 17 40 34 54.05 74 18 41 24 63.08 65 19 42 26 61.76 68 20 50 28 64.10 78 21 42 27 60.87 69 22 43 26 62.32 69 23 37 24 60.66 61 24 45 24 65.22 69 25 41 27 60.29 68 26 30 24 55.56 54 27 35 27 56.45 62 28 30 16 65.22 46 29 35 27 56.45 62 30 37 21 63.79 58 31 33 23 58.93 56 32 28 16 63.64 44 33 36 21 63.16 57 34 44 20 68.75 64 35 32 18 64.00 50 36 34 17 66.67 51 37 30 17 63.83 47 38 29 22 56.86 51 39 37 15 71.15 52 40 34 15 69.39 49 41 20 15 57.14 35 42 30 13 69.77 43 43 20 8 71.43 28 44 24 13 64.86 37 45 21 11 65.62 32 46 13 19 40.62 32 47 23 7 76.67 30 48 19 20 48.72 39 49 17 10 62.96 27 50 15 8 65.22 23 51 27 10 72.97 37 52 30 13 69.77 43 53 21 19 52.50 40 54 16 10 61.54 26 55 20 9 68.97 29 56 15 12 55.56 27 57 11 10 52.38 21 58 15 10 60.00 25 59 21 7 75.00 28 60 12 12 50.00 24 61 11 10 52.38 21 62 10 6 62.50 16 63 13 6 68.42 19 64 19 7 73.08 26 65 14 5 73.68 19 66 17 10 62.96 27 67 8 5 61.54 13 68 14 9 60.87 23 69 8 7 53.33 15 70 17 5 77.27 22 71 3 5 37.50 8 72 10 3 76.92 13 73 7 6 53.85 13 74 6 4 60.00 10 75 6 3 66.67 9 76 5 3 62.50 8 77 5 4 55.56 9 78 5 4 55.56 9 79 12 6 66.67 18 80 6 4 60.00 10 81 1 1 50.00 2 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 8 140 5.41 148 2 7 148 4.52 155 3 20 157 11.30 177 4 3 145 2.03 148 5 4 131 2.96 135 6 5 124 3.88 129 7 6 145 3.97 151 8 5 138 3.50 143 9 3 129 2.27 132 10 6 132 4.35 138 11 2 116 1.69 118 12 4 130 2.99 134 13 4 136 2.86 140 14 5 131 3.68 136 15 0 139 0.00 139 16 1 118 0.84 119 17 4 99 3.88 103 18 4 117 3.31 121 19 3 93 3.12 96 20 0 111 0.00 111 21 6 96 5.88 102 22 6 98 5.77 104 23 3 86 3.37 89 24 1 95 1.04 96 25 3 80 3.61 83 26 3 84 3.45 87 27 1 74 1.33 75 28 1 88 1.12 89 29 1 70 1.41 71 30 1 87 1.14 88 31 2 59 3.28 61 32 1 87 1.14 88 33 1 67 1.47 68 34 0 75 0.00 75 35 3 72 4.00 75 36 1 64 1.54 65 37 1 59 1.67 60 38 3 82 3.53 85 39 4 68 5.56 72 40 2 63 3.08 65 41 1 47 2.08 48 42 0 58 0.00 58 43 3 50 5.66 53 44 0 44 0.00 44 45 2 50 3.85 52 46 3 44 6.38 47 47 1 50 1.96 51 48 0 43 0.00 43 49 2 42 4.55 44 50 1 51 1.92 52 51 1 41 2.38 42 52 1 37 2.63 38 53 1 43 2.27 44 54 2 54 3.57 56 55 0 39 0.00 39 56 1 35 2.78 36 57 1 40 2.44 41 58 1 39 2.50 40 59 2 30 6.25 32 60 0 47 0.00 47 61 3 25 10.71 28 62 1 26 3.70 27 63 0 27 0.00 27 64 0 32 0.00 32 65 1 27 3.57 28 66 0 29 0.00 29 67 1 29 3.33 30 68 0 29 0.00 29 69 0 26 0.00 26 70 0 28 0.00 28 71 0 19 0.00 19 72 0 20 0.00 20 73 0 23 0.00 23 74 1 24 4.00 25 75 0 22 0.00 22 76 0 19 0.00 19 77 0 18 0.00 18 78 1 20 4.76 21 79 1 16 5.88 17 80 0 20 0.00 20 81 1 10 9.09 11 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 119 464 20.41 583 2 70 423 14.20 493 3 138 418 24.82 556 4 73 434 14.40 507 5 114 403 22.05 517 6 77 344 18.29 421 7 121 419 22.41 540 8 80 403 16.56 483 9 129 353 26.76 482 10 81 406 16.63 487 11 110 336 24.66 446 12 77 329 18.97 406 13 117 371 23.98 488 14 70 335 17.28 405 15 107 350 23.41 457 16 70 330 17.50 400 17 103 343 23.09 446 18 64 290 18.08 354 19 99 306 24.44 405 20 56 306 15.47 362 21 100 287 25.84 387 22 54 290 15.70 344 23 80 280 22.22 360 24 52 272 16.05 324 25 95 287 24.87 382 26 55 231 19.23 286 27 85 250 25.37 335 28 53 237 18.28 290 29 81 266 23.34 347 30 40 217 15.56 257 31 76 216 26.03 292 32 42 216 16.28 258 33 73 221 24.83 294 34 39 195 16.67 234 35 68 202 25.19 270 36 40 176 18.52 216 37 66 196 25.19 262 38 38 160 19.19 198 39 64 171 27.23 235 40 37 158 18.97 195 41 65 164 28.38 229 42 31 174 15.12 205 43 59 185 24.18 244 44 32 156 17.02 188 45 64 143 30.92 207 46 37 155 19.27 192 47 51 136 27.27 187 48 31 160 16.23 191 49 58 154 27.36 212 50 30 144 17.24 174 51 55 124 30.73 179 52 26 127 16.99 153 53 46 137 25.14 183 54 25 121 17.12 146 55 52 128 28.89 180 56 24 124 16.22 148 57 36 123 22.64 159 58 27 92 22.69 119 59 37 79 31.90 116 60 28 108 20.59 136 61 48 86 35.82 134 62 27 81 25.00 108 63 49 81 37.69 130 64 22 81 21.36 103 65 36 78 31.58 114 66 26 80 24.53 106 67 38 76 33.33 114 68 24 80 23.08 104 69 36 71 33.64 107 70 25 78 24.27 103 71 35 64 35.35 99 72 19 71 21.11 90 73 41 59 41.00 100 74 16 66 19.51 82 75 36 60 37.50 96 76 16 61 20.78 77 77 33 66 33.33 99 78 19 47 28.79 66 79 37 55 40.22 92 80 14 35 28.57 49 81 21 20 51.22 41