/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH05_21_S10_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH05_21_S10_L001_R2_001_val_2.fq.gz
Data processed at 13:43 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
11871
Pairs without alignments under any condition
22766
Pairs that did not map uniquely
5363
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
332448
Methylated C's in CpG context
31036
Methylated C's in CHG context
2093
Methylated C's in CHH context
49972
Methylated C's in Unknown context
561
Unmethylated C's in CpG context
15260
Unmethylated C's in CHG context
63202
Unmethylated C's in CHH context
170885
Unmethylated C's in Unknown context
732
Percentage methylation (CpG context)
67.0%
Percentage methylation (CHG context)
3.2%
Percentage methylation (CHH context)
22.6%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5975
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5896
original bottom strand
Deduplication
Alignments analysed
11871
Unique alignments
9140
Duplicates removed
2731
Duplicated alignments were found at 1895 different positions
