/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH05_06_S9_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH05_06_S9_L001_R2_001_val_2.fq.gz
Data processed at 13:43 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
7392
Pairs without alignments under any condition
26796
Pairs that did not map uniquely
5812
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
200086
Methylated C's in CpG context
2119
Methylated C's in CHG context
815
Methylated C's in CHH context
31548
Methylated C's in Unknown context
260
Unmethylated C's in CpG context
22432
Unmethylated C's in CHG context
31203
Unmethylated C's in CHH context
111969
Unmethylated C's in Unknown context
533
Percentage methylation (CpG context)
8.6%
Percentage methylation (CHG context)
2.5%
Percentage methylation (CHH context)
22.0%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
3734
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
3658
original bottom strand
Deduplication
Alignments analysed
7392
Unique alignments
5906
Duplicates removed
1486
Duplicated alignments were found at 1075 different positions
