CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 127 80 61.35 207 2 135 92 59.47 227 3 103 68 60.23 171 4 93 95 49.47 188 5 114 77 59.69 191 6 112 101 52.58 213 7 88 76 53.66 164 8 98 113 46.45 211 9 94 79 54.34 173 10 107 78 57.84 185 11 102 92 52.58 194 12 105 95 52.50 200 13 112 89 55.72 201 14 100 91 52.36 191 15 102 86 54.26 188 16 104 84 55.32 188 17 113 101 52.80 214 18 105 95 52.50 200 19 107 75 58.79 182 20 99 94 51.30 193 21 119 98 54.84 217 22 101 87 53.72 188 23 105 97 51.98 202 24 121 121 50.00 242 25 93 84 52.54 177 26 107 87 55.15 194 27 98 85 53.55 183 28 103 89 53.65 192 29 92 86 51.69 178 30 93 82 53.14 175 31 113 68 62.43 181 32 95 91 51.08 186 33 105 58 64.42 163 34 113 87 56.50 200 35 90 76 54.22 166 36 106 93 53.27 199 37 108 57 65.45 165 38 93 96 49.21 189 39 94 83 53.11 177 40 80 69 53.69 149 41 84 66 56.00 150 42 88 77 53.33 165 43 91 76 54.49 167 44 80 72 52.63 152 45 77 53 59.23 130 46 75 80 48.39 155 47 80 58 57.97 138 48 88 79 52.69 167 49 73 67 52.14 140 50 80 82 49.38 162 51 69 89 43.67 158 52 60 78 43.48 138 53 81 59 57.86 140 54 68 64 51.52 132 55 61 56 52.14 117 56 75 62 54.74 137 57 62 69 47.33 131 58 63 43 59.43 106 59 56 51 52.34 107 60 66 65 50.38 131 61 57 35 61.96 92 62 52 46 53.06 98 63 60 60 50.00 120 64 63 55 53.39 118 65 61 49 55.45 110 66 45 48 48.39 93 67 51 43 54.26 94 68 56 48 53.85 104 69 49 44 52.69 93 70 52 48 52.00 100 71 45 34 56.96 79 72 46 48 48.94 94 73 46 30 60.53 76 74 52 50 50.98 102 75 52 44 54.17 96 76 41 32 56.16 73 77 40 39 50.63 79 78 46 46 50.00 92 79 56 25 69.14 81 80 26 35 42.62 61 81 27 21 56.25 48 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 84 212 28.38 296 2 24 244 8.96 268 3 13 218 5.63 231 4 11 242 4.35 253 5 26 258 9.15 284 6 19 239 7.36 258 7 12 236 4.84 248 8 15 233 6.05 248 9 15 253 5.60 268 10 16 251 5.99 267 11 8 258 3.01 266 12 8 251 3.09 259 13 6 252 2.33 258 14 8 242 3.20 250 15 11 271 3.90 282 16 12 235 4.86 247 17 12 279 4.12 291 18 10 260 3.70 270 19 12 245 4.67 257 20 6 264 2.22 270 21 15 260 5.45 275 22 13 252 4.91 265 23 8 239 3.24 247 24 9 229 3.78 238 25 10 271 3.56 281 26 5 237 2.07 242 27 10 257 3.75 267 28 12 260 4.41 272 29 5 219 2.23 224 30 6 255 2.30 261 31 8 270 2.88 278 32 9 247 3.52 256 33 8 254 3.05 262 34 9 265 3.28 274 35 9 257 3.38 266 36 5 232 2.11 237 37 12 209 5.43 221 38 14 223 5.91 237 39 5 218 2.24 223 40 8 205 3.76 213 41 14 240 5.51 254 42 3 217 1.36 220 43 9 225 3.85 234 44 13 217 5.65 230 45 8 236 3.28 244 46 9 195 4.41 204 47 6 202 2.88 208 48 9 188 4.57 197 49 8 194 3.96 202 50 4 189 2.07 193 51 9 191 4.50 200 52 10 179 5.29 189 53 7 178 3.78 185 54 4 188 2.08 192 55 3 169 1.74 172 56 8 168 4.55 176 57 5 187 2.60 192 58 5 157 3.09 162 59 5 156 3.11 161 60 2 156 1.27 158 61 3 163 1.81 166 62 10 137 6.80 147 63 4 154 2.53 158 64 5 141 3.42 146 65 5 136 3.55 141 66 4 142 2.74 146 67 7 140 4.76 147 68 8 115 6.50 123 69 6 125 4.58 131 70 4 123 3.15 127 71 5 135 3.57 140 72 7 127 5.22 134 73 5 127 3.79 132 74 5 115 4.17 120 75 4 117 3.31 121 76 8 106 7.02 114 77 11 103 9.65 114 78 7 97 6.73 104 79 8 104 7.14 112 80 5 93 5.10 98 81 6 81 6.90 87 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 488 644 43.11 1132 2 434 698 38.34 1132 3 441 712 38.25 1153 4 430 720 37.39 1150 5 441 767 36.51 1208 6 463 717 39.24 1180 7 462 715 39.25 1177 8 468 723 39.29 1191 9 522 711 42.34 1233 10 463 712 39.40 1175 11 483 677 41.64 1160 12 455 731 38.36 1186 13 539 665 44.77 1204 14 481 717 40.15 1198 15 505 737 40.66 1242 16 464 737 38.63 1201 17 488 678 41.85 1166 18 465 716 39.37 1181 19 543 726 42.79 1269 20 482 754 39.00 1236 21 526 699 42.94 1225 22 482 738 39.51 1220 23 487 739 39.72 1226 24 498 732 40.49 1230 25 520 735 41.43 1255 26 477 728 39.59 1205 27 539 744 42.01 1283 28 475 721 39.72 1196 29 528 778 40.43 1306 30 464 715 39.36 1179 31 559 724 43.57 1283 32 484 760 38.91 1244 33 524 707 42.57 1231 34 472 688 40.69 1160 35 466 657 41.50 1123 36 467 659 41.47 1126 37 479 676 41.47 1155 38 464 658 41.35 1122 39 453 671 40.30 1124 40 408 636 39.08 1044 41 438 626 41.17 1064 42 418 645 39.32 1063 43 443 577 43.43 1020 44 402 617 39.45 1019 45 397 614 39.27 1011 46 383 592 39.28 975 47 423 614 40.79 1037 48 377 597 38.71 974 49 415 575 41.92 990 50 345 547 38.68 892 51 376 575 39.54 951 52 352 579 37.81 931 53 341 555 38.06 896 54 349 569 38.02 918 55 345 549 38.59 894 56 298 521 36.39 819 57 349 471 42.56 820 58 298 519 36.47 817 59 324 471 40.75 795 60 293 484 37.71 777 61 325 467 41.04 792 62 275 469 36.96 744 63 302 487 38.28 789 64 269 432 38.37 701 65 269 405 39.91 674 66 272 412 39.77 684 67 257 418 38.07 675 68 246 385 38.99 631 69 255 392 39.41 647 70 228 366 38.38 594 71 234 391 37.44 625 72 220 378 36.79 598 73 227 353 39.14 580 74 199 343 36.72 542 75 209 318 39.66 527 76 206 326 38.72 532 77 194 344 36.06 538 78 182 307 37.22 489 79 200 279 41.75 479 80 160 276 36.70 436 81 122 178 40.67 300 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 26 32 44.83 58 2 35 30 53.85 65 3 57 46 55.34 103 4 31 48 39.24 79 5 25 29 46.30 54 6 28 31 47.46 59 7 20 22 47.62 42 8 24 31 43.64 55 9 22 24 47.83 46 10 30 33 47.62 63 11 34 27 55.74 61 12 29 27 51.79 56 13 26 30 46.43 56 14 28 32 46.67 60 15 15 25 37.50 40 16 23 31 42.59 54 17 19 21 47.50 40 18 24 26 48.00 50 19 26 17 60.47 43 20 16 17 48.48 33 21 20 19 51.28 39 22 24 22 52.17 46 23 19 21 47.50 40 24 18 9 66.67 27 25 23 11 67.65 34 26 16 17 48.48 33 27 18 18 50.00 36 28 15 19 44.12 34 29 22 8 73.33 30 30 8 18 30.77 26 31 13 14 48.15 27 32 11 11 50.00 22 33 7 12 36.84 19 34 14 10 58.33 24 35 10 15 40.00 25 36 13 9 59.09 22 37 13 14 48.15 27 38 9 7 56.25 16 39 18 7 72.00 25 40 4 10 28.57 14 41 8 5 61.54 13 42 12 10 54.55 22 43 11 8 57.89 19 44 11 9 55.00 20 45 4 10 28.57 14 46 8 6 57.14 14 47 6 11 35.29 17 48 1 3 25.00 4 49 6 9 40.00 15 50 5 11 31.25 16 51 10 10 50.00 20 52 5 5 50.00 10 53 8 11 42.11 19 54 5 9 35.71 14 55 11 9 55.00 20 56 9 6 60.00 15 57 9 6 60.00 15 58 10 6 62.50 16 59 7 7 50.00 14 60 6 3 66.67 9 61 7 7 50.00 14 62 2 7 22.22 9 63 5 3 62.50 8 64 3 5 37.50 8 65 6 3 66.67 9 66 5 4 55.56 9 67 5 3 62.50 8 68 4 9 30.77 13 69 3 4 42.86 7 70 5 3 62.50 8 71 5 4 55.56 9 72 3 3 50.00 6 73 5 6 45.45 11 74 2 4 33.33 6 75 3 2 60.00 5 76 3 5 37.50 8 77 4 3 57.14 7 78 2 2 50.00 4 79 3 6 33.33 9 80 2 3 40.00 5 81 2 0 100.00 2 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 14 88 13.73 102 2 4 96 4.00 100 3 13 112 10.40 125 4 3 150 1.96 153 5 2 75 2.60 77 6 2 84 2.33 86 7 5 79 5.95 84 8 18 78 18.75 96 9 4 83 4.60 87 10 0 84 0.00 84 11 5 94 5.05 99 12 5 82 5.75 87 13 1 88 1.12 89 14 1 58 1.69 59 15 1 71 1.39 72 16 2 57 3.39 59 17 1 51 1.92 52 18 0 73 0.00 73 19 2 60 3.23 62 20 2 41 4.65 43 21 1 57 1.72 58 22 1 48 2.04 49 23 2 45 4.26 47 24 0 47 0.00 47 25 2 40 4.76 42 26 3 46 6.12 49 27 1 39 2.50 40 28 1 55 1.79 56 29 2 41 4.65 43 30 2 45 4.26 47 31 0 37 0.00 37 32 1 27 3.57 28 33 0 40 0.00 40 34 0 30 0.00 30 35 0 40 0.00 40 36 0 33 0.00 33 37 1 26 3.70 27 38 0 25 0.00 25 39 1 29 3.33 30 40 0 28 0.00 28 41 1 34 2.86 35 42 0 25 0.00 25 43 2 32 5.88 34 44 0 28 0.00 28 45 0 22 0.00 22 46 0 24 0.00 24 47 0 20 0.00 20 48 0 24 0.00 24 49 1 15 6.25 16 50 0 21 0.00 21 51 1 26 3.70 27 52 0 15 0.00 15 53 0 15 0.00 15 54 0 20 0.00 20 55 0 19 0.00 19 56 0 27 0.00 27 57 3 17 15.00 20 58 0 14 0.00 14 59 1 10 9.09 11 60 2 13 13.33 15 61 0 17 0.00 17 62 0 9 0.00 9 63 0 13 0.00 13 64 0 15 0.00 15 65 0 11 0.00 11 66 0 14 0.00 14 67 0 11 0.00 11 68 0 15 0.00 15 69 0 13 0.00 13 70 0 9 0.00 9 71 1 9 10.00 10 72 0 15 0.00 15 73 2 5 28.57 7 74 0 8 0.00 8 75 2 12 14.29 14 76 0 8 0.00 8 77 1 6 14.29 7 78 0 9 0.00 9 79 0 6 0.00 6 80 0 3 0.00 3 81 0 1 0.00 1 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 189 311 37.80 500 2 102 297 25.56 399 3 199 284 41.20 483 4 95 302 23.93 397 5 182 279 39.48 461 6 107 244 30.48 351 7 186 257 41.99 443 8 110 244 31.07 354 9 187 238 44.00 425 10 109 216 33.54 325 11 177 212 45.50 389 12 114 224 33.73 338 13 188 218 46.31 406 14 108 225 32.43 333 15 167 218 43.38 385 16 112 211 34.67 323 17 151 183 45.21 334 18 96 170 36.09 266 19 138 189 42.20 327 20 76 175 30.28 251 21 142 180 44.10 322 22 76 165 31.54 241 23 136 162 45.64 298 24 79 156 33.62 235 25 123 134 47.86 257 26 73 142 33.95 215 27 115 152 43.07 267 28 73 155 32.02 228 29 114 137 45.42 251 30 68 133 33.83 201 31 106 124 46.09 230 32 62 121 33.88 183 33 105 112 48.39 217 34 60 123 32.79 183 35 97 127 43.30 224 36 56 103 35.22 159 37 86 115 42.79 201 38 57 95 37.50 152 39 89 103 46.35 192 40 53 104 33.76 157 41 89 74 54.60 163 42 52 87 37.41 139 43 81 89 47.65 170 44 56 75 42.75 131 45 86 81 51.50 167 46 50 86 36.76 136 47 79 84 48.47 163 48 51 89 36.43 140 49 83 78 51.55 161 50 48 65 42.48 113 51 72 81 47.06 153 52 47 57 45.19 104 53 77 58 57.04 135 54 40 55 42.11 95 55 76 63 54.68 139 56 46 60 43.40 106 57 72 54 57.14 126 58 43 60 41.75 103 59 66 61 51.97 127 60 46 53 46.46 99 61 67 59 53.17 126 62 39 48 44.83 87 63 62 57 52.10 119 64 34 46 42.50 80 65 72 37 66.06 109 66 37 40 48.05 77 67 66 45 59.46 111 68 35 41 46.05 76 69 60 54 52.63 114 70 29 45 39.19 74 71 60 53 53.10 113 72 29 40 42.03 69 73 61 37 62.24 98 74 31 40 43.66 71 75 59 36 62.11 95 76 33 39 45.83 72 77 42 38 52.50 80 78 33 37 47.14 70 79 43 36 54.43 79 80 19 32 37.25 51 81 27 14 65.85 41