/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH05_01_S8_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH05_01_S8_L001_R2_001_val_2.fq.gz
Data processed at 13:43 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
10452
Pairs without alignments under any condition
21322
Pairs that did not map uniquely
8226
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
261122
Methylated C's in CpG context
16430
Methylated C's in CHG context
1755
Methylated C's in CHH context
70453
Methylated C's in Unknown context
682
Unmethylated C's in CpG context
14047
Unmethylated C's in CHG context
40834
Unmethylated C's in CHH context
117603
Unmethylated C's in Unknown context
769
Percentage methylation (CpG context)
53.9%
Percentage methylation (CHG context)
4.1%
Percentage methylation (CHH context)
37.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5252
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5200
original bottom strand
Deduplication
Alignments analysed
10452
Unique alignments
8765
Duplicates removed
1687
Duplicated alignments were found at 1304 different positions
