CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 258 82 75.88 340 2 274 86 76.11 360 3 222 94 70.25 316 4 265 86 75.50 351 5 255 109 70.05 364 6 243 75 76.42 318 7 245 99 71.22 344 8 236 108 68.60 344 9 255 121 67.82 376 10 265 86 75.50 351 11 219 91 70.65 310 12 256 93 73.35 349 13 268 94 74.03 362 14 260 87 74.93 347 15 271 83 76.55 354 16 259 93 73.58 352 17 260 86 75.14 346 18 310 96 76.35 406 19 271 75 78.32 346 20 254 80 76.05 334 21 254 87 74.49 341 22 243 76 76.18 319 23 270 94 74.18 364 24 277 98 73.87 375 25 270 79 77.36 349 26 276 69 80.00 345 27 257 80 76.26 337 28 244 91 72.84 335 29 246 93 72.57 339 30 282 84 77.05 366 31 249 74 77.09 323 32 256 98 72.32 354 33 255 78 76.58 333 34 275 105 72.37 380 35 251 92 73.18 343 36 289 79 78.53 368 37 246 77 76.16 323 38 241 80 75.08 321 39 237 110 68.30 347 40 236 78 75.16 314 41 245 84 74.47 329 42 262 82 76.16 344 43 237 87 73.15 324 44 242 69 77.81 311 45 238 74 76.28 312 46 225 80 73.77 305 47 246 64 79.35 310 48 224 67 76.98 291 49 187 64 74.50 251 50 217 62 77.78 279 51 212 73 74.39 285 52 210 56 78.95 266 53 215 80 72.88 295 54 206 69 74.91 275 55 191 55 77.64 246 56 188 75 71.48 263 57 197 69 74.06 266 58 175 57 75.43 232 59 197 50 79.76 247 60 188 56 77.05 244 61 165 68 70.82 233 62 167 53 75.91 220 63 173 57 75.22 230 64 171 74 69.80 245 65 155 44 77.89 199 66 162 64 71.68 226 67 166 49 77.21 215 68 165 47 77.83 212 69 161 52 75.59 213 70 147 53 73.50 200 71 152 55 73.43 207 72 134 50 72.83 184 73 148 59 71.50 207 74 148 52 74.00 200 75 134 42 76.14 176 76 127 59 68.28 186 77 114 55 67.46 169 78 132 50 72.53 182 79 140 36 79.55 176 80 115 38 75.16 153 81 80 18 81.63 98 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 37 389 8.69 426 2 16 392 3.92 408 3 20 404 4.72 424 4 16 413 3.73 429 5 11 380 2.81 391 6 24 417 5.44 441 7 14 404 3.35 418 8 10 432 2.26 442 9 12 365 3.18 377 10 19 417 4.36 436 11 12 417 2.80 429 12 8 400 1.96 408 13 12 415 2.81 427 14 10 404 2.42 414 15 10 391 2.49 401 16 11 376 2.84 387 17 11 430 2.49 441 18 15 397 3.64 412 19 9 397 2.22 406 20 9 432 2.04 441 21 11 445 2.41 456 22 13 437 2.89 450 23 11 408 2.63 419 24 9 411 2.14 420 25 17 408 4.00 425 26 17 401 4.07 418 27 12 433 2.70 445 28 10 425 2.30 435 29 13 431 2.93 444 30 5 398 1.24 403 31 6 433 1.37 439 32 8 398 1.97 406 33 14 427 3.17 441 34 9 385 2.28 394 35 14 389 3.47 403 36 6 392 1.51 398 37 13 379 3.32 392 38 9 398 2.21 407 39 9 380 2.31 389 40 8 361 2.17 369 41 5 380 1.30 385 42 9 368 2.39 377 43 9 357 2.46 366 44 6 356 1.66 362 45 11 368 2.90 379 46 6 368 1.60 374 47 9 363 2.42 372 48 9 344 2.55 353 49 9 322 2.72 331 50 13 350 3.58 363 51 4 332 1.19 336 52 17 322 5.01 339 53 9 330 2.65 339 54 6 312 1.89 318 55 6 294 2.00 300 56 4 316 1.25 320 57 10 312 3.11 322 58 5 297 1.66 302 59 11 289 3.67 300 60 8 276 2.82 284 61 1 288 0.35 289 62 11 252 4.18 263 63 7 300 2.28 307 64 9 252 3.45 261 65 3 265 1.12 268 66 3 260 1.14 263 67 8 267 2.91 275 68 7 267 2.55 274 69 5 246 1.99 251 70 7 246 2.77 253 71 8 226 3.42 234 72 3 260 1.14 263 73 12 246 4.65 258 74 4 217 1.81 221 75 9 222 3.90 231 76 2 236 0.84 238 77 4 204 1.92 208 78 7 224 3.03 231 79 4 182 2.15 186 80 4 170 2.30 174 81 0 133 0.00 133 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 185 969 16.03 1154 2 188 992 15.93 1180 3 196 1021 16.11 1217 4 199 1010 16.46 1209 5 199 991 16.72 1190 6 200 989 16.82 1189 7 180 994 15.33 1174 8 177 1001 15.03 1178 9 195 961 16.87 1156 10 211 999 17.44 1210 11 182 1051 14.76 1233 12 178 1036 14.66 1214 13 198 1049 15.88 1247 14 215 1044 17.08 1259 15 188 1038 15.33 1226 16 206 1095 15.83 1301 17 153 1106 12.15 1259 18 201 1078 15.72 1279 19 185 1127 14.10 1312 20 186 1115 14.30 1301 21 185 1125 14.12 1310 22 198 1089 15.38 1287 23 170 1117 13.21 1287 24 204 1131 15.28 1335 25 180 1089 14.18 1269 26 180 1055 14.57 1235 27 178 1099 13.94 1277 28 181 1039 14.84 1220 29 179 1023 14.89 1202 30 220 1112 16.52 1332 31 191 1029 15.66 1220 32 175 1100 13.73 1275 33 153 1032 12.91 1185 34 194 1024 15.93 1218 35 174 1011 14.68 1185 36 156 1027 13.19 1183 37 154 986 13.51 1140 38 152 1032 12.84 1184 39 158 1032 13.28 1190 40 145 990 12.78 1135 41 142 1046 11.95 1188 42 143 968 12.87 1111 43 132 970 11.98 1102 44 131 976 11.83 1107 45 135 950 12.44 1085 46 138 951 12.67 1089 47 128 928 12.12 1056 48 149 948 13.58 1097 49 117 919 11.29 1036 50 125 920 11.96 1045 51 110 927 10.61 1037 52 135 867 13.47 1002 53 109 938 10.41 1047 54 103 875 10.53 978 55 111 855 11.49 966 56 109 868 11.16 977 57 97 791 10.92 888 58 105 812 11.45 917 59 97 858 10.16 955 60 101 807 11.12 908 61 96 815 10.54 911 62 115 774 12.94 889 63 87 762 10.25 849 64 94 744 11.22 838 65 78 749 9.43 827 66 92 753 10.89 845 67 70 752 8.52 822 68 84 747 10.11 831 69 72 700 9.33 772 70 76 631 10.75 707 71 68 668 9.24 736 72 68 661 9.33 729 73 72 675 9.64 747 74 63 647 8.87 710 75 70 618 10.17 688 76 76 584 11.52 660 77 75 619 10.81 694 78 68 572 10.62 640 79 60 562 9.65 622 80 60 522 10.31 582 81 59 391 13.11 450 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 75 46 61.98 121 2 85 35 70.83 120 3 121 49 71.18 170 4 98 37 72.59 135 5 100 47 68.03 147 6 105 44 70.47 149 7 97 41 70.29 138 8 101 39 72.14 140 9 110 44 71.43 154 10 80 37 68.38 117 11 97 35 73.48 132 12 67 47 58.77 114 13 91 37 71.09 128 14 97 40 70.80 137 15 72 37 66.06 109 16 90 27 76.92 117 17 85 31 73.28 116 18 96 39 71.11 135 19 81 30 72.97 111 20 87 27 76.32 114 21 80 27 74.77 107 22 87 37 70.16 124 23 71 25 73.96 96 24 72 22 76.60 94 25 69 23 75.00 92 26 65 22 74.71 87 27 63 24 72.41 87 28 70 29 70.71 99 29 71 27 72.45 98 30 58 25 69.88 83 31 69 25 73.40 94 32 49 20 71.01 69 33 69 22 75.82 91 34 70 19 78.65 89 35 70 12 85.37 82 36 52 15 77.61 67 37 57 15 79.17 72 38 52 22 70.27 74 39 51 13 79.69 64 40 45 22 67.16 67 41 43 23 65.15 66 42 44 16 73.33 60 43 37 11 77.08 48 44 47 19 71.21 66 45 41 18 69.49 59 46 52 14 78.79 66 47 33 19 63.46 52 48 58 16 78.38 74 49 39 18 68.42 57 50 42 18 70.00 60 51 44 13 77.19 57 52 36 13 73.47 49 53 28 13 68.29 41 54 25 15 62.50 40 55 41 11 78.85 52 56 35 15 70.00 50 57 24 17 58.54 41 58 31 10 75.61 41 59 24 15 61.54 39 60 26 15 63.41 41 61 27 15 64.29 42 62 31 10 75.61 41 63 23 11 67.65 34 64 32 4 88.89 36 65 31 14 68.89 45 66 21 14 60.00 35 67 23 11 67.65 34 68 23 9 71.88 32 69 23 9 71.88 32 70 20 11 64.52 31 71 27 8 77.14 35 72 19 9 67.86 28 73 23 7 76.67 30 74 20 4 83.33 24 75 14 7 66.67 21 76 29 8 78.38 37 77 10 8 55.56 18 78 21 7 75.00 28 79 19 7 73.08 26 80 22 8 73.33 30 81 10 2 83.33 12 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 4 194 2.02 198 2 6 182 3.19 188 3 22 193 10.23 215 4 5 212 2.30 217 5 3 167 1.76 170 6 6 186 3.12 192 7 6 171 3.39 177 8 10 196 4.85 206 9 4 172 2.27 176 10 4 151 2.58 155 11 4 145 2.68 149 12 2 178 1.11 180 13 0 162 0.00 162 14 4 167 2.34 171 15 3 152 1.94 155 16 1 149 0.67 150 17 0 160 0.00 160 18 3 123 2.38 126 19 1 119 0.83 120 20 0 115 0.00 115 21 1 141 0.70 142 22 3 127 2.31 130 23 2 119 1.65 121 24 2 124 1.59 126 25 2 115 1.71 117 26 3 101 2.88 104 27 4 108 3.57 112 28 0 106 0.00 106 29 0 98 0.00 98 30 1 109 0.91 110 31 1 102 0.97 103 32 1 102 0.97 103 33 1 98 1.01 99 34 2 99 1.98 101 35 2 94 2.08 96 36 0 78 0.00 78 37 3 98 2.97 101 38 1 98 1.01 99 39 1 91 1.09 92 40 2 74 2.63 76 41 2 84 2.33 86 42 0 93 0.00 93 43 0 76 0.00 76 44 1 85 1.16 86 45 2 54 3.57 56 46 0 64 0.00 64 47 1 74 1.33 75 48 1 71 1.39 72 49 0 72 0.00 72 50 0 69 0.00 69 51 5 64 7.25 69 52 0 62 0.00 62 53 1 65 1.52 66 54 0 64 0.00 64 55 0 53 0.00 53 56 4 56 6.67 60 57 1 59 1.67 60 58 1 51 1.92 52 59 0 47 0.00 47 60 0 35 0.00 35 61 2 46 4.17 48 62 1 54 1.82 55 63 0 56 0.00 56 64 0 39 0.00 39 65 1 46 2.13 47 66 0 37 0.00 37 67 2 37 5.13 39 68 1 28 3.45 29 69 0 53 0.00 53 70 1 39 2.50 40 71 2 38 5.00 40 72 2 37 5.13 39 73 1 36 2.70 37 74 0 39 0.00 39 75 0 28 0.00 28 76 0 38 0.00 38 77 1 32 3.03 33 78 1 24 4.00 25 79 0 29 0.00 29 80 1 29 3.33 30 81 2 14 12.50 16 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 62 603 9.32 665 2 45 547 7.60 592 3 85 541 13.58 626 4 42 560 6.98 602 5 60 467 11.39 527 6 44 453 8.85 497 7 50 459 9.82 509 8 45 447 9.15 492 9 55 452 10.85 507 10 50 444 10.12 494 11 60 423 12.42 483 12 27 420 6.04 447 13 47 442 9.61 489 14 34 421 7.47 455 15 41 455 8.27 496 16 38 467 7.52 505 17 42 425 8.99 467 18 24 426 5.33 450 19 37 393 8.60 430 20 29 362 7.42 391 21 36 332 9.78 368 22 29 347 7.71 376 23 37 339 9.84 376 24 29 352 7.61 381 25 36 357 9.16 393 26 28 321 8.02 349 27 27 296 8.36 323 28 26 323 7.45 349 29 33 291 10.19 324 30 24 276 8.00 300 31 33 297 10.00 330 32 21 274 7.12 295 33 27 282 8.74 309 34 15 272 5.23 287 35 29 277 9.48 306 36 23 274 7.74 297 37 25 253 8.99 278 38 14 227 5.81 241 39 22 241 8.37 263 40 18 236 7.09 254 41 24 227 9.56 251 42 12 241 4.74 253 43 20 227 8.10 247 44 14 182 7.14 196 45 21 185 10.19 206 46 14 192 6.80 206 47 20 178 10.10 198 48 13 174 6.95 187 49 13 188 6.47 201 50 16 190 7.77 206 51 17 197 7.94 214 52 17 178 8.72 195 53 12 191 5.91 203 54 16 174 8.42 190 55 14 175 7.41 189 56 19 157 10.80 176 57 14 149 8.59 163 58 16 168 8.70 184 59 15 173 7.98 188 60 17 149 10.24 166 61 15 160 8.57 175 62 14 137 9.27 151 63 13 139 8.55 152 64 14 132 9.59 146 65 12 137 8.05 149 66 16 129 11.03 145 67 9 127 6.62 136 68 14 120 10.45 134 69 7 112 5.88 119 70 13 116 10.08 129 71 12 117 9.30 129 72 12 122 8.96 134 73 10 122 7.58 132 74 5 94 5.05 99 75 10 108 8.47 118 76 14 108 11.48 122 77 10 89 10.10 99 78 7 91 7.14 98 79 6 87 6.45 93 80 7 71 8.97 78 81 3 42 6.67 45