/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH03_33_S7_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH03_33_S7_L001_R2_001_val_2.fq.gz
Data processed at 13:43 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
11375
Pairs without alignments under any condition
24481
Pairs that did not map uniquely
4144
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
353110
Methylated C's in CpG context
45645
Methylated C's in CHG context
1877
Methylated C's in CHH context
26628
Methylated C's in Unknown context
373
Unmethylated C's in CpG context
15552
Unmethylated C's in CHG context
72198
Unmethylated C's in CHH context
191210
Unmethylated C's in Unknown context
650
Percentage methylation (CpG context)
74.6%
Percentage methylation (CHG context)
2.5%
Percentage methylation (CHH context)
12.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5675
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5700
original bottom strand
Deduplication
Alignments analysed
11375
Unique alignments
8973
Duplicates removed
2402
Duplicated alignments were found at 1720 different positions
