CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 33 127 20.62 160 2 56 129 30.27 185 3 35 100 25.93 135 4 30 133 18.40 163 5 30 97 23.62 127 6 36 135 21.05 171 7 34 108 23.94 142 8 27 123 18.00 150 9 41 111 26.97 152 10 35 131 21.08 166 11 35 134 20.71 169 12 40 124 24.39 164 13 36 125 22.36 161 14 33 133 19.88 166 15 32 113 22.07 145 16 32 114 21.92 146 17 25 130 16.13 155 18 28 133 17.39 161 19 34 116 22.67 150 20 39 134 22.54 173 21 41 128 24.26 169 22 24 122 16.44 146 23 42 104 28.77 146 24 39 120 24.53 159 25 31 112 21.68 143 26 38 120 24.05 158 27 22 106 17.19 128 28 30 129 18.87 159 29 34 121 21.94 155 30 33 135 19.64 168 31 25 117 17.61 142 32 20 114 14.93 134 33 28 121 18.79 149 34 38 151 20.11 189 35 25 123 16.89 148 36 24 129 15.69 153 37 30 93 24.39 123 38 27 149 15.34 176 39 21 97 17.80 118 40 32 105 23.36 137 41 30 102 22.73 132 42 25 104 19.38 129 43 32 100 24.24 132 44 36 126 22.22 162 45 20 103 16.26 123 46 31 102 23.31 133 47 33 97 25.38 130 48 34 92 26.98 126 49 33 98 25.19 131 50 26 100 20.63 126 51 30 85 26.09 115 52 20 88 18.52 108 53 27 104 20.61 131 54 20 81 19.80 101 55 29 86 25.22 115 56 25 94 21.01 119 57 21 87 19.44 108 58 25 83 23.15 108 59 31 95 24.60 126 60 22 89 19.82 111 61 22 78 22.00 100 62 21 86 19.63 107 63 22 78 22.00 100 64 21 74 22.11 95 65 20 79 20.20 99 66 23 78 22.77 101 67 22 82 21.15 104 68 14 75 15.73 89 69 20 82 19.61 102 70 17 64 20.99 81 71 20 69 22.47 89 72 17 75 18.48 92 73 15 61 19.74 76 74 18 62 22.50 80 75 17 59 22.37 76 76 13 55 19.12 68 77 14 62 18.42 76 78 13 61 17.57 74 79 21 62 25.30 83 80 8 56 12.50 64 81 7 34 17.07 41 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 41 165 19.90 206 2 12 162 6.90 174 3 11 187 5.56 198 4 9 159 5.36 168 5 8 181 4.23 189 6 12 193 5.85 205 7 7 167 4.02 174 8 8 167 4.57 175 9 9 179 4.79 188 10 4 201 1.95 205 11 11 219 4.78 230 12 5 178 2.73 183 13 5 176 2.76 181 14 1 185 0.54 186 15 3 188 1.57 191 16 10 186 5.10 196 17 3 211 1.40 214 18 10 194 4.90 204 19 7 185 3.65 192 20 4 198 1.98 202 21 5 192 2.54 197 22 2 192 1.03 194 23 3 179 1.65 182 24 6 179 3.24 185 25 7 165 4.07 172 26 5 191 2.55 196 27 7 196 3.45 203 28 4 195 2.01 199 29 4 189 2.07 193 30 4 162 2.41 166 31 3 173 1.70 176 32 6 170 3.41 176 33 7 196 3.45 203 34 2 181 1.09 183 35 5 142 3.40 147 36 4 169 2.31 173 37 1 171 0.58 172 38 1 173 0.57 174 39 7 175 3.85 182 40 6 177 3.28 183 41 8 159 4.79 167 42 3 185 1.60 188 43 4 165 2.37 169 44 3 160 1.84 163 45 5 168 2.89 173 46 6 150 3.85 156 47 4 160 2.44 164 48 8 146 5.19 154 49 7 141 4.73 148 50 2 142 1.39 144 51 5 138 3.50 143 52 8 154 4.94 162 53 7 134 4.96 141 54 4 121 3.20 125 55 7 154 4.35 161 56 3 146 2.01 149 57 5 142 3.40 147 58 6 131 4.38 137 59 2 127 1.55 129 60 3 146 2.01 149 61 1 135 0.74 136 62 3 135 2.17 138 63 6 126 4.55 132 64 2 122 1.61 124 65 6 115 4.96 121 66 5 122 3.94 127 67 7 120 5.51 127 68 7 100 6.54 107 69 3 92 3.16 95 70 3 105 2.78 108 71 3 118 2.48 121 72 0 101 0.00 101 73 1 116 0.85 117 74 3 126 2.33 129 75 4 113 3.42 117 76 5 97 4.90 102 77 6 109 5.22 115 78 5 110 4.35 115 79 7 88 7.37 95 80 4 73 5.19 77 81 2 65 2.99 67 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 274 561 32.81 835 2 237 574 29.22 811 3 259 578 30.94 837 4 251 585 30.02 836 5 260 613 29.78 873 6 262 593 30.64 855 7 274 553 33.13 827 8 245 572 29.99 817 9 283 523 35.11 806 10 248 640 27.93 888 11 263 572 31.50 835 12 262 564 31.72 826 13 306 578 34.62 884 14 286 557 33.93 843 15 276 598 31.58 874 16 251 633 28.39 884 17 278 538 34.07 816 18 301 603 33.30 904 19 295 603 32.85 898 20 252 631 28.54 883 21 274 611 30.96 885 22 248 623 28.47 871 23 288 606 32.21 894 24 275 614 30.93 889 25 266 642 29.30 908 26 268 622 30.11 890 27 292 624 31.88 916 28 252 567 30.77 819 29 270 568 32.22 838 30 266 612 30.30 878 31 263 609 30.16 872 32 269 626 30.06 895 33 266 573 31.70 839 34 258 585 30.60 843 35 262 574 31.34 836 36 257 543 32.12 800 37 270 528 33.83 798 38 244 551 30.69 795 39 259 551 31.98 810 40 224 503 30.81 727 41 252 561 31.00 813 42 223 525 29.81 748 43 238 527 31.11 765 44 229 524 30.41 753 45 237 511 31.68 748 46 201 521 27.84 722 47 212 505 29.57 717 48 179 539 24.93 718 49 207 510 28.87 717 50 182 493 26.96 675 51 187 498 27.30 685 52 182 496 26.84 678 53 192 490 28.15 682 54 191 511 27.21 702 55 187 491 27.58 678 56 182 475 27.70 657 57 186 484 27.76 670 58 177 412 30.05 589 59 161 437 26.92 598 60 151 422 26.35 573 61 184 423 30.31 607 62 169 430 28.21 599 63 161 427 27.38 588 64 144 414 25.81 558 65 147 390 27.37 537 66 148 414 26.33 562 67 144 374 27.80 518 68 126 392 24.32 518 69 139 403 25.65 542 70 133 364 26.76 497 71 124 360 25.62 484 72 119 353 25.21 472 73 143 336 29.85 479 74 114 362 23.95 476 75 124 343 26.55 467 76 116 346 25.11 462 77 117 348 25.16 465 78 111 315 26.06 426 79 109 315 25.71 424 80 82 287 22.22 369 81 78 220 26.17 298 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 18 46 28.12 64 2 13 53 19.70 66 3 31 57 35.23 88 4 16 71 18.39 87 5 12 50 19.35 62 6 12 54 18.18 66 7 9 53 14.52 62 8 11 60 15.49 71 9 12 57 17.39 69 10 12 56 17.65 68 11 11 49 18.33 60 12 12 44 21.43 56 13 12 46 20.69 58 14 11 46 19.30 57 15 6 45 11.76 51 16 15 47 24.19 62 17 8 37 17.78 45 18 13 44 22.81 57 19 8 41 16.33 49 20 8 30 21.05 38 21 9 46 16.36 55 22 9 37 19.57 46 23 9 38 19.15 47 24 11 31 26.19 42 25 13 41 24.07 54 26 4 33 10.81 37 27 11 38 22.45 49 28 9 41 18.00 50 29 9 32 21.95 41 30 5 31 13.89 36 31 4 33 10.81 37 32 5 27 15.62 32 33 5 34 12.82 39 34 4 36 10.00 40 35 7 24 22.58 31 36 3 23 11.54 26 37 9 30 23.08 39 38 4 26 13.33 30 39 11 29 27.50 40 40 8 18 30.77 26 41 13 20 39.39 33 42 2 21 8.70 23 43 5 15 25.00 20 44 8 22 26.67 30 45 10 30 25.00 40 46 3 21 12.50 24 47 5 16 23.81 21 48 3 22 12.00 25 49 11 30 26.83 41 50 7 18 28.00 25 51 3 19 13.64 22 52 3 17 15.00 20 53 2 12 14.29 14 54 2 16 11.11 18 55 1 19 5.00 20 56 6 15 28.57 21 57 3 22 12.00 25 58 2 14 12.50 16 59 1 12 7.69 13 60 5 22 18.52 27 61 4 8 33.33 12 62 2 5 28.57 7 63 2 13 13.33 15 64 5 11 31.25 16 65 3 16 15.79 19 66 1 15 6.25 16 67 3 10 23.08 13 68 2 6 25.00 8 69 4 11 26.67 15 70 2 11 15.38 13 71 2 14 12.50 16 72 0 6 0.00 6 73 3 13 18.75 16 74 2 7 22.22 9 75 0 13 0.00 13 76 1 9 10.00 10 77 2 9 18.18 11 78 1 11 8.33 12 79 0 8 0.00 8 80 1 9 10.00 10 81 2 1 66.67 3 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 7 77 8.33 84 2 2 95 2.06 97 3 5 93 5.10 98 4 2 143 1.38 145 5 0 81 0.00 81 6 2 81 2.41 83 7 3 90 3.23 93 8 7 103 6.36 110 9 3 62 4.62 65 10 0 75 0.00 75 11 2 77 2.53 79 12 1 80 1.23 81 13 2 82 2.38 84 14 3 80 3.61 83 15 3 69 4.17 72 16 2 52 3.70 54 17 2 76 2.56 78 18 0 63 0.00 63 19 0 56 0.00 56 20 2 38 5.00 40 21 2 61 3.17 63 22 0 68 0.00 68 23 1 55 1.79 56 24 1 75 1.32 76 25 2 44 4.35 46 26 2 50 3.85 52 27 0 53 0.00 53 28 0 61 0.00 61 29 3 45 6.25 48 30 1 55 1.79 56 31 0 55 0.00 55 32 2 38 5.00 40 33 2 36 5.26 38 34 1 41 2.38 42 35 1 52 1.89 53 36 1 46 2.13 47 37 1 36 2.70 37 38 1 33 2.94 34 39 1 46 2.13 47 40 1 53 1.85 54 41 0 28 0.00 28 42 1 34 2.86 35 43 2 29 6.45 31 44 2 26 7.14 28 45 0 34 0.00 34 46 0 42 0.00 42 47 0 30 0.00 30 48 0 30 0.00 30 49 0 27 0.00 27 50 1 25 3.85 26 51 1 20 4.76 21 52 1 23 4.17 24 53 0 20 0.00 20 54 2 22 8.33 24 55 0 23 0.00 23 56 1 20 4.76 21 57 0 22 0.00 22 58 0 27 0.00 27 59 1 27 3.57 28 60 0 16 0.00 16 61 0 26 0.00 26 62 1 15 6.25 16 63 1 26 3.70 27 64 1 14 6.67 15 65 0 15 0.00 15 66 1 21 4.55 22 67 0 20 0.00 20 68 1 17 5.56 18 69 0 20 0.00 20 70 1 21 4.55 22 71 0 18 0.00 18 72 0 9 0.00 9 73 2 16 11.11 18 74 0 11 0.00 11 75 1 17 5.56 18 76 0 12 0.00 12 77 0 18 0.00 18 78 0 6 0.00 6 79 3 16 15.79 19 80 0 10 0.00 10 81 0 6 0.00 6 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 106 291 26.70 397 2 47 286 14.11 333 3 114 285 28.57 399 4 48 301 13.75 349 5 104 257 28.81 361 6 49 272 15.26 321 7 103 216 32.29 319 8 55 262 17.35 317 9 101 246 29.11 347 10 53 258 17.04 311 11 97 226 30.03 323 12 54 230 19.01 284 13 89 244 26.73 333 14 57 234 19.59 291 15 81 240 25.23 321 16 50 233 17.67 283 17 76 223 25.42 299 18 34 210 13.93 244 19 80 188 29.85 268 20 28 192 12.73 220 21 71 217 24.65 288 22 39 192 16.88 231 23 73 196 27.14 269 24 35 189 15.62 224 25 72 180 28.57 252 26 35 176 16.59 211 27 71 163 30.34 234 28 27 180 13.04 207 29 58 187 23.67 245 30 31 175 15.05 206 31 54 166 24.55 220 32 33 166 16.58 199 33 50 139 26.46 189 34 25 155 13.89 180 35 51 155 24.76 206 36 25 148 14.45 173 37 50 136 26.88 186 38 26 132 16.46 158 39 47 147 24.23 194 40 21 128 14.09 149 41 45 146 23.56 191 42 26 136 16.05 162 43 42 127 24.85 169 44 17 113 13.08 130 45 39 108 26.53 147 46 28 101 21.71 129 47 41 113 26.62 154 48 20 107 15.75 127 49 40 94 29.85 134 50 14 99 12.39 113 51 40 110 26.67 150 52 19 110 14.73 129 53 37 94 28.24 131 54 13 97 11.82 110 55 41 75 35.34 116 56 15 97 13.39 112 57 35 89 28.23 124 58 19 86 18.10 105 59 27 82 24.77 109 60 19 69 21.59 88 61 37 65 36.27 102 62 19 77 19.79 96 63 27 73 27.00 100 64 14 77 15.38 91 65 28 79 26.17 107 66 18 73 19.78 91 67 31 75 29.25 106 68 17 79 17.71 96 69 23 64 26.44 87 70 21 64 24.71 85 71 22 64 25.58 86 72 18 67 21.18 85 73 20 64 23.81 84 74 14 61 18.67 75 75 22 61 26.51 83 76 12 61 16.44 73 77 23 62 27.06 85 78 17 69 19.77 86 79 22 50 30.56 72 80 10 60 14.29 70 81 18 15 54.55 33