/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH03_15_S6_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH03_15_S6_L001_R2_001_val_2.fq.gz
Data processed at 13:43 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
7978
Pairs without alignments under any condition
25966
Pairs that did not map uniquely
6056
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
203797
Methylated C's in CpG context
5548
Methylated C's in CHG context
1087
Methylated C's in CHH context
39079
Methylated C's in Unknown context
348
Unmethylated C's in CpG context
21216
Unmethylated C's in CHG context
32439
Unmethylated C's in CHH context
104428
Unmethylated C's in Unknown context
605
Percentage methylation (CpG context)
20.7%
Percentage methylation (CHG context)
3.2%
Percentage methylation (CHH context)
27.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
3975
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
4003
original bottom strand
Deduplication
Alignments analysed
7978
Unique alignments
6405
Duplicates removed
1573
Duplicated alignments were found at 1152 different positions
