CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 33 107 23.57 140 2 44 132 25.00 176 3 27 104 20.61 131 4 26 117 18.18 143 5 14 89 13.59 103 6 21 135 13.46 156 7 20 115 14.81 135 8 22 127 14.77 149 9 20 91 18.02 111 10 16 120 11.76 136 11 22 118 15.71 140 12 24 117 17.02 141 13 9 127 6.62 136 14 19 120 13.67 139 15 20 129 13.42 149 16 20 118 14.49 138 17 17 114 12.98 131 18 13 129 9.15 142 19 21 110 16.03 131 20 23 137 14.38 160 21 18 129 12.24 147 22 22 122 15.28 144 23 14 136 9.33 150 24 17 110 13.39 127 25 8 114 6.56 122 26 15 125 10.71 140 27 19 107 15.08 126 28 23 141 14.02 164 29 14 107 11.57 121 30 21 120 14.89 141 31 25 122 17.01 147 32 14 126 10.00 140 33 17 114 12.98 131 34 23 101 18.55 124 35 15 109 12.10 124 36 6 94 6.00 100 37 15 109 12.10 124 38 14 107 11.57 121 39 13 96 11.93 109 40 20 120 14.29 140 41 13 90 12.62 103 42 9 101 8.18 110 43 19 111 14.62 130 44 21 113 15.67 134 45 15 92 14.02 107 46 11 99 10.00 110 47 15 91 14.15 106 48 17 105 13.93 122 49 15 101 12.93 116 50 19 96 16.52 115 51 10 99 9.17 109 52 12 95 11.21 107 53 14 99 12.39 113 54 17 88 16.19 105 55 13 72 15.29 85 56 10 84 10.64 94 57 11 77 12.50 88 58 14 93 13.08 107 59 15 79 15.96 94 60 14 92 13.21 106 61 8 70 10.26 78 62 13 70 15.66 83 63 4 82 4.65 86 64 12 83 12.63 95 65 8 80 9.09 88 66 14 69 16.87 83 67 11 70 13.58 81 68 16 67 19.28 83 69 7 55 11.29 62 70 16 73 17.98 89 71 10 54 15.62 64 72 12 62 16.22 74 73 12 61 16.44 73 74 11 57 16.18 68 75 12 52 18.75 64 76 11 55 16.67 66 77 17 50 25.37 67 78 9 64 12.33 73 79 8 42 16.00 50 80 7 59 10.61 66 81 5 29 14.71 34 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 64 135 32.16 199 2 16 149 9.70 165 3 9 146 5.81 155 4 10 138 6.76 148 5 15 156 8.77 171 6 18 145 11.04 163 7 17 172 8.99 189 8 12 147 7.55 159 9 10 125 7.41 135 10 4 145 2.68 149 11 9 145 5.84 154 12 6 140 4.11 146 13 7 146 4.58 153 14 10 158 5.95 168 15 7 148 4.52 155 16 4 147 2.65 151 17 7 146 4.58 153 18 12 156 7.14 168 19 2 175 1.13 177 20 8 153 4.97 161 21 8 156 4.88 164 22 7 177 3.80 184 23 5 144 3.36 149 24 9 147 5.77 156 25 6 141 4.08 147 26 5 167 2.91 172 27 9 146 5.81 155 28 5 133 3.62 138 29 4 155 2.52 159 30 12 142 7.79 154 31 7 153 4.38 160 32 5 167 2.91 172 33 6 156 3.70 162 34 9 151 5.62 160 35 6 152 3.80 158 36 4 129 3.01 133 37 3 146 2.01 149 38 10 118 7.81 128 39 9 156 5.45 165 40 3 128 2.29 131 41 7 154 4.35 161 42 6 132 4.35 138 43 7 121 5.47 128 44 4 136 2.86 140 45 5 133 3.62 138 46 2 111 1.77 113 47 8 132 5.71 140 48 5 123 3.91 128 49 4 124 3.12 128 50 4 126 3.08 130 51 4 116 3.33 120 52 4 123 3.15 127 53 3 120 2.44 123 54 9 123 6.82 132 55 1 126 0.79 127 56 8 92 8.00 100 57 6 106 5.36 112 58 5 112 4.27 117 59 5 115 4.17 120 60 7 116 5.69 123 61 5 94 5.05 99 62 4 99 3.88 103 63 4 111 3.48 115 64 9 88 9.28 97 65 10 99 9.17 109 66 3 96 3.03 99 67 3 80 3.61 83 68 2 92 2.13 94 69 4 102 3.77 106 70 6 100 5.66 106 71 5 92 5.15 97 72 3 76 3.80 79 73 6 74 7.50 80 74 9 88 9.28 97 75 6 84 6.67 90 76 7 81 7.95 88 77 5 82 5.75 87 78 3 82 3.53 85 79 8 60 11.76 68 80 3 66 4.35 69 81 2 56 3.45 58 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 466 470 49.79 936 2 418 456 47.83 874 3 424 493 46.24 917 4 417 506 45.18 923 5 398 520 43.36 918 6 459 503 47.71 962 7 405 507 44.41 912 8 414 447 48.08 861 9 460 432 51.57 892 10 463 487 48.74 950 11 452 506 47.18 958 12 455 494 47.95 949 13 480 480 50.00 960 14 473 537 46.83 1010 15 459 492 48.26 951 16 474 506 48.37 980 17 440 539 44.94 979 18 498 529 48.49 1027 19 456 529 46.29 985 20 483 506 48.84 989 21 481 514 48.34 995 22 471 517 47.67 988 23 487 472 50.78 959 24 505 532 48.70 1037 25 473 474 49.95 947 26 526 486 51.98 1012 27 480 499 49.03 979 28 474 479 49.74 953 29 482 506 48.79 988 30 496 521 48.77 1017 31 481 483 49.90 964 32 483 492 49.54 975 33 460 462 49.89 922 34 467 489 48.85 956 35 450 488 47.97 938 36 462 477 49.20 939 37 474 456 50.97 930 38 455 478 48.77 933 39 445 448 49.83 893 40 436 449 49.27 885 41 437 453 49.10 890 42 435 463 48.44 898 43 420 439 48.89 859 44 425 413 50.72 838 45 388 403 49.05 791 46 417 438 48.77 855 47 379 410 48.04 789 48 410 449 47.73 859 49 379 404 48.40 783 50 402 402 50.00 804 51 343 403 45.98 746 52 387 373 50.92 760 53 344 407 45.81 751 54 399 372 51.75 771 55 357 402 47.04 759 56 347 361 49.01 708 57 313 389 44.59 702 58 352 306 53.50 658 59 315 328 48.99 643 60 327 345 48.66 672 61 290 337 46.25 627 62 305 347 46.78 652 63 270 305 46.96 575 64 293 308 48.75 601 65 264 313 45.75 577 66 283 294 49.05 577 67 248 290 46.10 538 68 276 295 48.34 571 69 228 313 42.14 541 70 259 273 48.68 532 71 227 261 46.52 488 72 267 261 50.57 528 73 205 265 43.62 470 74 237 255 48.17 492 75 175 232 43.00 407 76 243 237 50.62 480 77 185 250 42.53 435 78 213 217 49.53 430 79 173 215 44.59 388 80 185 220 45.68 405 81 132 149 46.98 281 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 7 56 11.11 63 2 11 56 16.42 67 3 48 50 48.98 98 4 5 47 9.62 52 5 12 49 19.67 61 6 3 33 8.33 36 7 2 45 4.26 47 8 6 45 11.76 51 9 5 47 9.62 52 10 7 45 13.46 52 11 4 48 7.69 52 12 3 56 5.08 59 13 3 39 7.14 42 14 5 48 9.43 53 15 2 48 4.00 50 16 1 42 2.33 43 17 4 51 7.27 55 18 7 30 18.92 37 19 4 38 9.52 42 20 5 34 12.82 39 21 3 32 8.57 35 22 1 28 3.45 29 23 5 29 14.71 34 24 1 24 4.00 25 25 4 18 18.18 22 26 3 21 12.50 24 27 1 21 4.55 22 28 1 25 3.85 26 29 3 20 13.04 23 30 2 19 9.52 21 31 3 24 11.11 27 32 1 27 3.57 28 33 2 21 8.70 23 34 2 19 9.52 21 35 1 24 4.00 25 36 2 15 11.76 17 37 2 19 9.52 21 38 0 14 0.00 14 39 0 20 0.00 20 40 1 18 5.26 19 41 1 12 7.69 13 42 6 17 26.09 23 43 1 11 8.33 12 44 0 16 0.00 16 45 2 13 13.33 15 46 3 9 25.00 12 47 2 11 15.38 13 48 2 12 14.29 14 49 1 16 5.88 17 50 1 7 12.50 8 51 2 11 15.38 13 52 1 12 7.69 13 53 0 9 0.00 9 54 2 10 16.67 12 55 2 10 16.67 12 56 0 14 0.00 14 57 0 11 0.00 11 58 0 11 0.00 11 59 0 7 0.00 7 60 1 11 8.33 12 61 1 6 14.29 7 62 1 10 9.09 11 63 1 15 6.25 16 64 1 13 7.14 14 65 1 11 8.33 12 66 1 10 9.09 11 67 3 6 33.33 9 68 0 5 0.00 5 69 2 9 18.18 11 70 1 8 11.11 9 71 1 9 10.00 10 72 1 8 11.11 9 73 2 4 33.33 6 74 1 8 11.11 9 75 0 7 0.00 7 76 0 5 0.00 5 77 0 5 0.00 5 78 1 6 14.29 7 79 0 2 0.00 2 80 1 5 16.67 6 81 0 0 0 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 12 60 16.67 72 2 11 67 14.10 78 3 15 89 14.42 104 4 4 109 3.54 113 5 1 50 1.96 51 6 9 68 11.69 77 7 5 62 7.46 67 8 21 83 20.19 104 9 4 52 7.14 56 10 3 52 5.45 55 11 2 68 2.86 70 12 1 53 1.85 54 13 1 47 2.08 48 14 2 51 3.77 53 15 1 58 1.69 59 16 1 47 2.08 48 17 1 47 2.08 48 18 0 43 0.00 43 19 1 46 2.13 47 20 0 47 0.00 47 21 2 32 5.88 34 22 1 33 2.94 34 23 0 46 0.00 46 24 6 32 15.79 38 25 1 36 2.70 37 26 2 28 6.67 30 27 2 30 6.25 32 28 0 29 0.00 29 29 1 32 3.03 33 30 0 22 0.00 22 31 1 28 3.45 29 32 1 26 3.70 27 33 1 23 4.17 24 34 1 24 4.00 25 35 1 33 2.94 34 36 0 31 0.00 31 37 0 32 0.00 32 38 0 13 0.00 13 39 1 24 4.00 25 40 0 25 0.00 25 41 1 33 2.94 34 42 0 17 0.00 17 43 2 20 9.09 22 44 1 24 4.00 25 45 0 24 0.00 24 46 1 14 6.67 15 47 0 20 0.00 20 48 2 28 6.67 30 49 1 22 4.35 23 50 1 12 7.69 13 51 0 18 0.00 18 52 2 21 8.70 23 53 0 17 0.00 17 54 0 10 0.00 10 55 0 23 0.00 23 56 2 16 11.11 18 57 1 14 6.67 15 58 1 10 9.09 11 59 0 18 0.00 18 60 1 11 8.33 12 61 2 11 15.38 13 62 1 10 9.09 11 63 0 15 0.00 15 64 1 15 6.25 16 65 0 17 0.00 17 66 0 14 0.00 14 67 0 3 0.00 3 68 1 16 5.88 17 69 1 8 11.11 9 70 2 10 16.67 12 71 2 7 22.22 9 72 1 7 12.50 8 73 2 3 40.00 5 74 0 11 0.00 11 75 2 7 22.22 9 76 0 7 0.00 7 77 0 5 0.00 5 78 0 5 0.00 5 79 1 8 11.11 9 80 0 4 0.00 4 81 0 1 0.00 1 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 219 217 50.23 436 2 109 237 31.50 346 3 200 226 46.95 426 4 100 222 31.06 322 5 196 200 49.49 396 6 97 207 31.91 304 7 196 189 50.91 385 8 122 171 41.64 293 9 190 174 52.20 364 10 147 174 45.79 321 11 188 160 54.02 348 12 138 168 45.10 306 13 190 183 50.94 373 14 131 189 40.94 320 15 160 145 52.46 305 16 120 153 43.96 273 17 159 147 51.96 306 18 101 157 39.15 258 19 149 131 53.21 280 20 92 129 41.63 221 21 131 120 52.19 251 22 90 137 39.65 227 23 141 119 54.23 260 24 83 152 35.32 235 25 123 140 46.77 263 26 81 127 38.94 208 27 131 115 53.25 246 28 77 126 37.93 203 29 118 126 48.36 244 30 67 117 36.41 184 31 125 104 54.59 229 32 81 93 46.55 174 33 117 95 55.19 212 34 64 90 41.56 154 35 108 100 51.92 208 36 74 97 43.27 171 37 105 96 52.24 201 38 78 73 51.66 151 39 107 76 58.47 183 40 67 81 45.27 148 41 102 87 53.97 189 42 63 97 39.38 160 43 95 80 54.29 175 44 67 75 47.18 142 45 89 58 60.54 147 46 64 81 44.14 145 47 92 61 60.13 153 48 57 71 44.53 128 49 89 61 59.33 150 50 62 71 46.62 133 51 83 69 54.61 152 52 62 59 51.24 121 53 83 58 58.87 141 54 48 64 42.86 112 55 79 56 58.52 135 56 51 56 47.66 107 57 75 44 63.03 119 58 46 65 41.44 111 59 78 52 60.00 130 60 48 63 43.24 111 61 65 49 57.02 114 62 56 44 56.00 100 63 60 39 60.61 99 64 50 43 53.76 93 65 68 31 68.69 99 66 36 46 43.90 82 67 66 32 67.35 98 68 46 45 50.55 91 69 59 42 58.42 101 70 51 37 57.95 88 71 55 36 60.44 91 72 50 35 58.82 85 73 50 31 61.73 81 74 44 37 54.32 81 75 50 32 60.98 82 76 40 37 51.95 77 77 51 33 60.71 84 78 38 40 48.72 78 79 48 40 54.55 88 80 31 34 47.69 65 81 30 8 78.95 38