/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH03_04_S5_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH03_04_S5_L001_R2_001_val_2.fq.gz
Data processed at 13:43 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
8475
Pairs without alignments under any condition
22031
Pairs that did not map uniquely
9494
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
200080
Methylated C's in CpG context
3062
Methylated C's in CHG context
1268
Methylated C's in CHH context
67834
Methylated C's in Unknown context
659
Unmethylated C's in CpG context
19389
Unmethylated C's in CHG context
25947
Unmethylated C's in CHH context
82580
Unmethylated C's in Unknown context
705
Percentage methylation (CpG context)
13.6%
Percentage methylation (CHG context)
4.7%
Percentage methylation (CHH context)
45.1%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
4235
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
4240
original bottom strand
Deduplication
Alignments analysed
8475
Unique alignments
7228
Duplicates removed
1247
Duplicated alignments were found at 944 different positions
