CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 207 92 69.23 299 2 249 84 74.77 333 3 175 64 73.22 239 4 184 90 67.15 274 5 186 90 67.39 276 6 180 93 65.93 273 7 189 85 68.98 274 8 188 92 67.14 280 9 216 87 71.29 303 10 182 75 70.82 257 11 178 96 64.96 274 12 229 90 71.79 319 13 196 91 68.29 287 14 189 85 68.98 274 15 182 89 67.16 271 16 179 77 69.92 256 17 173 85 67.05 258 18 203 86 70.24 289 19 186 71 72.37 257 20 169 80 67.87 249 21 229 76 75.08 305 22 216 96 69.23 312 23 188 96 66.20 284 24 212 111 65.63 323 25 204 63 76.40 267 26 193 62 75.69 255 27 207 76 73.14 283 28 168 107 61.09 275 29 218 72 75.17 290 30 203 72 73.82 275 31 195 70 73.58 265 32 197 86 69.61 283 33 200 71 73.80 271 34 168 75 69.14 243 35 198 76 72.26 274 36 206 78 72.54 284 37 187 68 73.33 255 38 169 60 73.80 229 39 154 78 66.38 232 40 188 73 72.03 261 41 169 65 72.22 234 42 158 74 68.10 232 43 170 69 71.13 239 44 134 90 59.82 224 45 140 60 70.00 200 46 158 55 74.18 213 47 150 67 69.12 217 48 155 64 70.78 219 49 138 61 69.35 199 50 135 58 69.95 193 51 139 61 69.50 200 52 135 73 64.90 208 53 146 64 69.52 210 54 128 53 70.72 181 55 126 52 70.79 178 56 121 63 65.76 184 57 132 56 70.21 188 58 109 55 66.46 164 59 105 55 65.62 160 60 132 54 70.97 186 61 114 48 70.37 162 62 113 53 68.07 166 63 116 51 69.46 167 64 91 48 65.47 139 65 112 50 69.14 162 66 91 53 63.19 144 67 79 46 63.20 125 68 89 36 71.20 125 69 87 33 72.50 120 70 80 51 61.07 131 71 105 41 71.92 146 72 80 27 74.77 107 73 93 47 66.43 140 74 92 39 70.23 131 75 79 36 68.70 115 76 58 44 56.86 102 77 81 42 65.85 123 78 76 24 76.00 100 79 69 32 68.32 101 80 67 24 73.63 91 81 49 20 71.01 69 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 60 346 14.78 406 2 20 318 5.92 338 3 30 331 8.31 361 4 18 364 4.71 382 5 17 348 4.66 365 6 21 331 5.97 352 7 14 329 4.08 343 8 6 345 1.71 351 9 16 336 4.55 352 10 18 360 4.76 378 11 12 392 2.97 404 12 19 359 5.03 378 13 9 361 2.43 370 14 9 389 2.26 398 15 8 345 2.27 353 16 15 343 4.19 358 17 11 366 2.92 377 18 11 368 2.90 379 19 10 318 3.05 328 20 8 392 2.00 400 21 8 363 2.16 371 22 7 378 1.82 385 23 9 372 2.36 381 24 6 367 1.61 373 25 14 366 3.68 380 26 9 375 2.34 384 27 9 346 2.54 355 28 15 344 4.18 359 29 8 353 2.22 361 30 8 354 2.21 362 31 9 312 2.80 321 32 6 342 1.72 348 33 12 350 3.31 362 34 11 317 3.35 328 35 8 328 2.38 336 36 7 321 2.13 328 37 8 352 2.22 360 38 11 336 3.17 347 39 9 333 2.63 342 40 9 302 2.89 311 41 5 291 1.69 296 42 11 307 3.46 318 43 10 300 3.23 310 44 10 286 3.38 296 45 8 305 2.56 313 46 7 286 2.39 293 47 4 271 1.45 275 48 6 256 2.29 262 49 5 258 1.90 263 50 8 269 2.89 277 51 8 274 2.84 282 52 9 251 3.46 260 53 11 244 4.31 255 54 6 241 2.43 247 55 3 230 1.29 233 56 7 222 3.06 229 57 7 221 3.07 228 58 6 224 2.61 230 59 5 198 2.46 203 60 5 224 2.18 229 61 2 227 0.87 229 62 3 200 1.48 203 63 4 191 2.05 195 64 7 185 3.65 192 65 6 207 2.82 213 66 6 170 3.41 176 67 4 163 2.40 167 68 7 172 3.91 179 69 12 192 5.88 204 70 2 173 1.14 175 71 4 134 2.90 138 72 4 160 2.44 164 73 4 146 2.67 150 74 4 148 2.63 152 75 6 138 4.17 144 76 5 125 3.85 130 77 4 136 2.86 140 78 1 111 0.89 112 79 3 144 2.04 147 80 5 114 4.20 119 81 6 86 6.52 92 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 325 875 27.08 1200 2 302 922 24.67 1224 3 298 898 24.92 1196 4 291 960 23.26 1251 5 298 947 23.94 1245 6 292 929 23.91 1221 7 270 910 22.88 1180 8 261 969 21.22 1230 9 292 907 24.35 1199 10 304 951 24.22 1255 11 284 1010 21.95 1294 12 285 1017 21.89 1302 13 292 1013 22.38 1305 14 305 1003 23.32 1308 15 274 1017 21.22 1291 16 278 1002 21.72 1280 17 281 1019 21.62 1300 18 292 1026 22.15 1318 19 332 1077 23.56 1409 20 295 1096 21.21 1391 21 300 1041 22.37 1341 22 311 1039 23.04 1350 23 290 1014 22.24 1304 24 298 1041 22.26 1339 25 300 1011 22.88 1311 26 280 1075 20.66 1355 27 299 1045 22.25 1344 28 283 1044 21.33 1327 29 283 1044 21.33 1327 30 280 1039 21.23 1319 31 292 994 22.71 1286 32 282 994 22.10 1276 33 282 1023 21.61 1305 34 281 977 22.34 1258 35 259 926 21.86 1185 36 266 928 22.28 1194 37 241 938 20.44 1179 38 257 885 22.50 1142 39 245 948 20.54 1193 40 240 902 21.02 1142 41 215 905 19.20 1120 42 243 905 21.17 1148 43 201 903 18.21 1104 44 246 858 22.28 1104 45 188 818 18.69 1006 46 224 791 22.07 1015 47 195 805 19.50 1000 48 222 799 21.74 1021 49 188 779 19.44 967 50 185 810 18.59 995 51 186 714 20.67 900 52 199 718 21.70 917 53 162 715 18.47 877 54 190 705 21.23 895 55 174 706 19.77 880 56 174 721 19.44 895 57 165 649 20.27 814 58 170 669 20.26 839 59 153 656 18.91 809 60 156 608 20.42 764 61 148 589 20.08 737 62 139 599 18.83 738 63 129 553 18.91 682 64 142 590 19.40 732 65 110 515 17.60 625 66 122 509 19.33 631 67 116 541 17.66 657 68 119 521 18.59 640 69 100 497 16.75 597 70 105 485 17.80 590 71 111 503 18.08 614 72 110 474 18.84 584 73 100 462 17.79 562 74 94 425 18.11 519 75 82 443 15.62 525 76 98 425 18.74 523 77 81 435 15.70 516 78 83 409 16.87 492 79 82 384 17.60 466 80 73 371 16.44 444 81 58 254 18.59 312 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 42 28 60.00 70 2 73 25 74.49 98 3 83 30 73.45 113 4 55 36 60.44 91 5 37 32 53.62 69 6 51 31 62.20 82 7 42 33 56.00 75 8 45 22 67.16 67 9 55 28 66.27 83 10 49 35 58.33 84 11 49 27 64.47 76 12 39 31 55.71 70 13 46 26 63.89 72 14 52 23 69.33 75 15 42 23 64.62 65 16 33 14 70.21 47 17 37 23 61.67 60 18 31 25 55.36 56 19 33 16 67.35 49 20 25 16 60.98 41 21 38 10 79.17 48 22 38 18 67.86 56 23 36 15 70.59 51 24 34 14 70.83 48 25 31 10 75.61 41 26 29 13 69.05 42 27 39 16 70.91 55 28 26 9 74.29 35 29 17 17 50.00 34 30 23 11 67.65 34 31 18 13 58.06 31 32 28 11 71.79 39 33 19 5 79.17 24 34 22 10 68.75 32 35 16 17 48.48 33 36 21 8 72.41 29 37 17 6 73.91 23 38 29 3 90.62 32 39 20 14 58.82 34 40 16 7 69.57 23 41 14 7 66.67 21 42 10 8 55.56 18 43 16 2 88.89 18 44 15 6 71.43 21 45 16 4 80.00 20 46 18 10 64.29 28 47 7 5 58.33 12 48 14 7 66.67 21 49 14 7 66.67 21 50 12 2 85.71 14 51 11 3 78.57 14 52 12 4 75.00 16 53 6 4 60.00 10 54 10 5 66.67 15 55 12 6 66.67 18 56 5 6 45.45 11 57 9 0 100.00 9 58 15 6 71.43 21 59 4 6 40.00 10 60 12 4 75.00 16 61 5 8 38.46 13 62 5 4 55.56 9 63 7 3 70.00 10 64 8 1 88.89 9 65 7 6 53.85 13 66 11 7 61.11 18 67 5 3 62.50 8 68 9 1 90.00 10 69 6 1 85.71 7 70 6 4 60.00 10 71 4 4 50.00 8 72 4 2 66.67 6 73 7 2 77.78 9 74 4 5 44.44 9 75 9 3 75.00 12 76 3 1 75.00 4 77 3 4 42.86 7 78 1 3 25.00 4 79 4 3 57.14 7 80 10 1 90.91 11 81 2 0 100.00 2 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 8 119 6.30 127 2 6 112 5.08 118 3 19 123 13.38 142 4 5 136 3.55 141 5 5 102 4.67 107 6 5 110 4.35 115 7 3 119 2.46 122 8 6 121 4.72 127 9 1 93 1.06 94 10 3 94 3.09 97 11 0 95 0.00 95 12 1 112 0.88 113 13 2 93 2.11 95 14 1 103 0.96 104 15 3 111 2.63 114 16 1 87 1.14 88 17 1 76 1.30 77 18 0 69 0.00 69 19 0 72 0.00 72 20 0 70 0.00 70 21 3 63 4.55 66 22 2 65 2.99 67 23 0 64 0.00 64 24 1 62 1.59 63 25 1 53 1.85 54 26 1 62 1.59 63 27 3 57 5.00 60 28 0 66 0.00 66 29 1 60 1.64 61 30 1 48 2.04 49 31 1 41 2.38 42 32 0 44 0.00 44 33 2 52 3.70 54 34 0 30 0.00 30 35 1 51 1.92 52 36 0 40 0.00 40 37 1 41 2.38 42 38 0 20 0.00 20 39 1 40 2.44 41 40 1 35 2.78 36 41 1 27 3.57 28 42 0 32 0.00 32 43 2 34 5.56 36 44 0 36 0.00 36 45 1 37 2.63 38 46 2 21 8.70 23 47 0 33 0.00 33 48 0 25 0.00 25 49 0 25 0.00 25 50 0 22 0.00 22 51 1 28 3.45 29 52 1 27 3.57 28 53 0 21 0.00 21 54 0 17 0.00 17 55 0 19 0.00 19 56 0 18 0.00 18 57 0 29 0.00 29 58 0 18 0.00 18 59 1 20 4.76 21 60 2 21 8.70 23 61 0 12 0.00 12 62 0 21 0.00 21 63 1 12 7.69 13 64 1 15 6.25 16 65 1 10 9.09 11 66 0 23 0.00 23 67 1 15 6.25 16 68 0 15 0.00 15 69 0 9 0.00 9 70 1 4 20.00 5 71 0 17 0.00 17 72 1 9 10.00 10 73 0 10 0.00 10 74 2 7 22.22 9 75 0 8 0.00 8 76 0 14 0.00 14 77 1 11 8.33 12 78 0 9 0.00 9 79 0 7 0.00 7 80 0 8 0.00 8 81 0 9 0.00 9 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 89 390 18.58 479 2 49 367 11.78 416 3 97 369 20.82 466 4 36 352 9.28 388 5 81 288 21.95 369 6 49 295 14.24 344 7 87 298 22.60 385 8 34 320 9.60 354 9 69 299 18.75 368 10 53 296 15.19 349 11 69 289 19.27 358 12 48 284 14.46 332 13 61 291 17.33 352 14 41 285 12.58 326 15 61 277 18.05 338 16 54 294 15.52 348 17 62 269 18.73 331 18 47 236 16.61 283 19 55 225 19.64 280 20 37 221 14.34 258 21 65 227 22.26 292 22 39 191 16.96 230 23 47 212 18.15 259 24 36 187 16.14 223 25 54 209 20.53 263 26 35 163 17.68 198 27 57 173 24.78 230 28 34 174 16.35 208 29 38 164 18.81 202 30 38 156 19.59 194 31 43 158 21.39 201 32 39 154 20.21 193 33 45 129 25.86 174 34 33 143 18.75 176 35 40 134 22.99 174 36 26 145 15.20 171 37 38 143 20.99 181 38 26 113 18.71 139 39 41 114 26.45 155 40 23 105 17.97 128 41 43 103 29.45 146 42 26 113 18.71 139 43 38 96 28.36 134 44 26 101 20.47 127 45 38 98 27.94 136 46 30 95 24.00 125 47 35 82 29.91 117 48 28 93 23.14 121 49 34 76 30.91 110 50 27 78 25.71 105 51 32 85 27.35 117 52 29 96 23.20 125 53 36 71 33.64 107 54 28 65 30.11 93 55 31 74 29.52 105 56 27 85 24.11 112 57 28 71 28.28 99 58 29 60 32.58 89 59 26 64 28.89 90 60 33 54 37.93 87 61 34 66 34.00 100 62 34 55 38.20 89 63 30 52 36.59 82 64 30 58 34.09 88 65 29 42 40.85 71 66 20 48 29.41 68 67 28 44 38.89 72 68 19 50 27.54 69 69 27 39 40.91 66 70 29 33 46.77 62 71 22 42 34.38 64 72 21 51 29.17 72 73 24 41 36.92 65 74 23 34 40.35 57 75 20 37 35.09 57 76 21 34 38.18 55 77 19 44 30.16 63 78 24 36 40.00 60 79 21 35 37.50 56 80 16 30 34.78 46 81 11 16 40.74 27