/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH01_38_S4_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH01_38_S4_L001_R2_001_val_2.fq.gz
Data processed at 13:43 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
11572
Pairs without alignments under any condition
22692
Pairs that did not map uniquely
5736
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
309729
Methylated C's in CpG context
31379
Methylated C's in CHG context
1708
Methylated C's in CHH context
39483
Methylated C's in Unknown context
486
Unmethylated C's in CpG context
13283
Unmethylated C's in CHG context
57744
Unmethylated C's in CHH context
166132
Unmethylated C's in Unknown context
868
Percentage methylation (CpG context)
70.3%
Percentage methylation (CHG context)
2.9%
Percentage methylation (CHH context)
19.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5727
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5845
original bottom strand
Deduplication
Alignments analysed
11572
Unique alignments
9332
Duplicates removed
2240
Duplicated alignments were found at 1699 different positions
