CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 219 105 67.59 324 2 245 101 70.81 346 3 231 103 69.16 334 4 227 108 67.76 335 5 227 98 69.85 325 6 179 99 64.39 278 7 203 91 69.05 294 8 225 114 66.37 339 9 200 92 68.49 292 10 231 117 66.38 348 11 243 96 71.68 339 12 232 103 69.25 335 13 236 86 73.29 322 14 228 115 66.47 343 15 224 105 68.09 329 16 236 104 69.41 340 17 226 109 67.46 335 18 226 90 71.52 316 19 223 100 69.04 323 20 228 103 68.88 331 21 208 112 65.00 320 22 193 111 63.49 304 23 230 103 69.07 333 24 251 95 72.54 346 25 220 110 66.67 330 26 239 95 71.56 334 27 217 90 70.68 307 28 207 110 65.30 317 29 222 96 69.81 318 30 201 89 69.31 290 31 226 99 69.54 325 32 225 104 68.39 329 33 220 86 71.90 306 34 185 89 67.52 274 35 206 86 70.55 292 36 227 88 72.06 315 37 231 82 73.80 313 38 205 84 70.93 289 39 211 90 70.10 301 40 192 85 69.31 277 41 207 87 70.41 294 42 209 87 70.61 296 43 187 80 70.04 267 44 177 68 72.24 245 45 209 98 68.08 307 46 160 86 65.04 246 47 173 80 68.38 253 48 179 89 66.79 268 49 197 69 74.06 266 50 160 73 68.67 233 51 176 75 70.12 251 52 159 74 68.24 233 53 162 76 68.07 238 54 169 73 69.83 242 55 157 57 73.36 214 56 148 76 66.07 224 57 160 71 69.26 231 58 179 76 70.20 255 59 112 60 65.12 172 60 137 76 64.32 213 61 145 68 68.08 213 62 148 65 69.48 213 63 114 72 61.29 186 64 148 66 69.16 214 65 127 71 64.14 198 66 141 78 64.38 219 67 138 55 71.50 193 68 123 62 66.49 185 69 144 54 72.73 198 70 132 64 67.35 196 71 117 59 66.48 176 72 132 52 71.74 184 73 128 56 69.57 184 74 121 53 69.54 174 75 106 59 64.24 165 76 108 50 68.35 158 77 103 57 64.38 160 78 101 35 74.26 136 79 98 41 70.50 139 80 98 36 73.13 134 81 59 23 71.95 82 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 43 370 10.41 413 2 16 367 4.18 383 3 14 360 3.74 374 4 11 412 2.60 423 5 18 405 4.26 423 6 13 411 3.07 424 7 12 403 2.89 415 8 11 387 2.76 398 9 12 404 2.88 416 10 9 421 2.09 430 11 14 390 3.47 404 12 13 411 3.07 424 13 9 429 2.05 438 14 10 415 2.35 425 15 6 412 1.44 418 16 9 396 2.22 405 17 6 401 1.47 407 18 8 389 2.02 397 19 11 418 2.56 429 20 11 386 2.77 397 21 13 452 2.80 465 22 18 404 4.27 422 23 7 418 1.65 425 24 6 409 1.45 415 25 7 417 1.65 424 26 8 384 2.04 392 27 9 432 2.04 441 28 6 414 1.43 420 29 11 375 2.85 386 30 9 384 2.29 393 31 11 416 2.58 427 32 13 385 3.27 398 33 6 370 1.60 376 34 5 378 1.31 383 35 14 403 3.36 417 36 10 396 2.46 406 37 9 364 2.41 373 38 11 352 3.03 363 39 8 371 2.11 379 40 12 366 3.17 378 41 5 349 1.41 354 42 15 332 4.32 347 43 11 328 3.24 339 44 4 377 1.05 381 45 4 332 1.19 336 46 9 333 2.63 342 47 7 330 2.08 337 48 6 343 1.72 349 49 7 344 1.99 351 50 10 323 3.00 333 51 4 277 1.42 281 52 5 321 1.53 326 53 6 289 2.03 295 54 9 304 2.88 313 55 5 283 1.74 288 56 6 292 2.01 298 57 10 295 3.28 305 58 6 250 2.34 256 59 1 261 0.38 262 60 5 265 1.85 270 61 6 255 2.30 261 62 4 253 1.56 257 63 5 253 1.94 258 64 4 248 1.59 252 65 6 264 2.22 270 66 9 241 3.60 250 67 4 225 1.75 229 68 9 239 3.63 248 69 5 221 2.21 226 70 4 224 1.75 228 71 4 217 1.81 221 72 7 226 3.00 233 73 6 217 2.69 223 74 7 222 3.06 229 75 7 201 3.37 208 76 8 178 4.30 186 77 1 204 0.49 205 78 3 185 1.60 188 79 5 194 2.51 199 80 5 167 2.91 172 81 2 124 1.59 126 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 248 1075 18.75 1323 2 223 1094 16.93 1317 3 251 1055 19.22 1306 4 272 1092 19.94 1364 5 224 1115 16.73 1339 6 227 1097 17.15 1324 7 210 1015 17.14 1225 8 233 1056 18.08 1289 9 257 1040 19.81 1297 10 246 1061 18.82 1307 11 223 1094 16.93 1317 12 238 1110 17.66 1348 13 239 1142 17.31 1381 14 259 1126 18.70 1385 15 240 1105 17.84 1345 16 231 1123 17.06 1354 17 226 1144 16.50 1370 18 246 1167 17.41 1413 19 243 1098 18.12 1341 20 241 1145 17.39 1386 21 249 1151 17.79 1400 22 210 1144 15.51 1354 23 222 1134 16.37 1356 24 257 1204 17.59 1461 25 228 1171 16.30 1399 26 250 1199 17.25 1449 27 222 1191 15.71 1413 28 228 1154 16.50 1382 29 236 1179 16.68 1415 30 217 1176 15.58 1393 31 200 1120 15.15 1320 32 211 1058 16.63 1269 33 214 1119 16.05 1333 34 201 1072 15.79 1273 35 203 1117 15.38 1320 36 190 1118 14.53 1308 37 184 1055 14.85 1239 38 198 1025 16.19 1223 39 182 1073 14.50 1255 40 187 1074 14.83 1261 41 181 1065 14.53 1246 42 170 1070 13.71 1240 43 176 1038 14.50 1214 44 157 997 13.60 1154 45 175 962 15.39 1137 46 156 999 13.51 1155 47 164 1021 13.84 1185 48 156 939 14.25 1095 49 153 959 13.76 1112 50 128 930 12.10 1058 51 147 880 14.31 1027 52 154 887 14.79 1041 53 148 925 13.79 1073 54 140 901 13.45 1041 55 138 866 13.75 1004 56 132 892 12.89 1024 57 143 811 14.99 954 58 136 782 14.81 918 59 132 839 13.59 971 60 132 794 14.25 926 61 125 759 14.14 884 62 108 757 12.49 865 63 112 772 12.67 884 64 99 726 12.00 825 65 118 725 14.00 843 66 103 707 12.72 810 67 108 715 13.12 823 68 108 698 13.40 806 69 108 669 13.90 777 70 67 648 9.37 715 71 92 658 12.27 750 72 86 616 12.25 702 73 86 624 12.11 710 74 81 647 11.13 728 75 81 617 11.60 698 76 64 649 8.98 713 77 88 602 12.75 690 78 63 549 10.29 612 79 75 541 12.18 616 80 56 531 9.54 587 81 51 371 12.09 422 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 81 46 63.78 127 2 74 50 59.68 124 3 92 36 71.88 128 4 75 47 61.48 122 5 85 36 70.25 121 6 75 35 68.18 110 7 66 40 62.26 106 8 60 31 65.93 91 9 69 39 63.89 108 10 66 29 69.47 95 11 68 29 70.10 97 12 57 33 63.33 90 13 85 36 70.25 121 14 59 40 59.60 99 15 69 29 70.41 98 16 61 39 61.00 100 17 67 41 62.04 108 18 53 38 58.24 91 19 63 19 76.83 82 20 71 23 75.53 94 21 60 35 63.16 95 22 61 19 76.25 80 23 56 33 62.92 89 24 50 25 66.67 75 25 48 28 63.16 76 26 56 21 72.73 77 27 35 27 56.45 62 28 51 24 68.00 75 29 43 12 78.18 55 30 45 15 75.00 60 31 51 22 69.86 73 32 34 18 65.38 52 33 35 22 61.40 57 34 42 30 58.33 72 35 54 23 70.13 77 36 36 16 69.23 52 37 34 13 72.34 47 38 37 17 68.52 54 39 25 10 71.43 35 40 46 9 83.64 55 41 29 11 72.50 40 42 37 17 68.52 54 43 33 13 71.74 46 44 28 14 66.67 42 45 32 17 65.31 49 46 31 7 81.58 38 47 23 14 62.16 37 48 23 8 74.19 31 49 24 13 64.86 37 50 22 12 64.71 34 51 23 22 51.11 45 52 20 14 58.82 34 53 27 8 77.14 35 54 23 10 69.70 33 55 21 7 75.00 28 56 18 7 72.00 25 57 22 15 59.46 37 58 19 5 79.17 24 59 18 10 64.29 28 60 15 13 53.57 28 61 24 6 80.00 30 62 19 7 73.08 26 63 18 5 78.26 23 64 15 5 75.00 20 65 19 4 82.61 23 66 21 4 84.00 25 67 12 10 54.55 22 68 13 9 59.09 22 69 11 4 73.33 15 70 14 5 73.68 19 71 21 5 80.77 26 72 12 4 75.00 16 73 11 9 55.00 20 74 10 7 58.82 17 75 12 2 85.71 14 76 9 7 56.25 16 77 6 9 40.00 15 78 12 2 85.71 14 79 6 7 46.15 13 80 8 3 72.73 11 81 8 1 88.89 9 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 3 180 1.64 183 2 4 159 2.45 163 3 8 159 4.79 167 4 0 180 0.00 180 5 2 128 1.54 130 6 4 153 2.55 157 7 5 140 3.45 145 8 6 152 3.80 158 9 2 136 1.45 138 10 2 149 1.32 151 11 3 139 2.11 142 12 3 147 2.00 150 13 2 144 1.37 146 14 2 136 1.45 138 15 3 118 2.48 121 16 2 126 1.56 128 17 6 105 5.41 111 18 1 117 0.85 118 19 2 104 1.89 106 20 0 124 0.00 124 21 1 120 0.83 121 22 0 95 0.00 95 23 0 102 0.00 102 24 1 112 0.88 113 25 0 106 0.00 106 26 2 95 2.06 97 27 1 101 0.98 102 28 1 87 1.14 88 29 2 85 2.30 87 30 2 101 1.94 103 31 1 70 1.41 71 32 2 81 2.41 83 33 0 79 0.00 79 34 0 78 0.00 78 35 1 92 1.08 93 36 1 61 1.61 62 37 4 64 5.88 68 38 0 76 0.00 76 39 0 79 0.00 79 40 2 55 3.51 57 41 0 72 0.00 72 42 0 57 0.00 57 43 2 56 3.45 58 44 1 61 1.61 62 45 0 57 0.00 57 46 0 53 0.00 53 47 3 43 6.52 46 48 0 55 0.00 55 49 0 44 0.00 44 50 0 43 0.00 43 51 2 47 4.08 49 52 1 46 2.13 47 53 1 32 3.03 33 54 3 47 6.00 50 55 2 48 4.00 50 56 0 42 0.00 42 57 0 40 0.00 40 58 0 47 0.00 47 59 2 32 5.88 34 60 0 33 0.00 33 61 1 37 2.63 38 62 0 42 0.00 42 63 1 41 2.38 42 64 0 37 0.00 37 65 0 25 0.00 25 66 0 35 0.00 35 67 0 33 0.00 33 68 1 23 4.17 24 69 1 24 4.00 25 70 0 27 0.00 27 71 3 22 12.00 25 72 0 19 0.00 19 73 0 29 0.00 29 74 0 25 0.00 25 75 0 24 0.00 24 76 0 21 0.00 21 77 0 17 0.00 17 78 0 17 0.00 17 79 2 21 8.70 23 80 0 23 0.00 23 81 0 11 0.00 11 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 68 542 11.15 610 2 56 499 10.09 555 3 70 523 11.80 593 4 42 534 7.29 576 5 57 451 11.22 508 6 42 490 7.89 532 7 48 499 8.78 547 8 45 499 8.27 544 9 59 447 11.66 506 10 50 428 10.46 478 11 52 420 11.02 472 12 39 431 8.30 470 13 48 421 10.23 469 14 39 399 8.90 438 15 42 381 9.93 423 16 35 364 8.77 399 17 39 401 8.86 440 18 26 340 7.10 366 19 42 347 10.80 389 20 32 317 9.17 349 21 33 328 9.14 361 22 36 313 10.32 349 23 31 352 8.09 383 24 21 323 6.10 344 25 40 315 11.27 355 26 25 317 7.31 342 27 34 265 11.37 299 28 25 289 7.96 314 29 24 256 8.57 280 30 18 280 6.04 298 31 32 272 10.53 304 32 27 268 9.15 295 33 35 256 12.03 291 34 19 250 7.06 269 35 32 235 11.99 267 36 16 247 6.08 263 37 34 217 13.55 251 38 15 227 6.20 242 39 28 198 12.39 226 40 17 238 6.67 255 41 26 187 12.21 213 42 16 194 7.62 210 43 24 207 10.39 231 44 11 187 5.56 198 45 22 176 11.11 198 46 11 180 5.76 191 47 24 143 14.37 167 48 11 174 5.95 185 49 26 157 14.21 183 50 19 150 11.24 169 51 22 147 13.02 169 52 14 151 8.48 165 53 20 143 12.27 163 54 14 127 9.93 141 55 23 137 14.38 160 56 13 134 8.84 147 57 15 128 10.49 143 58 9 118 7.09 127 59 18 133 11.92 151 60 11 119 8.46 130 61 9 113 7.38 122 62 13 110 10.57 123 63 18 105 14.63 123 64 12 125 8.76 137 65 15 118 11.28 133 66 8 109 6.84 117 67 15 124 10.79 139 68 8 106 7.02 114 69 12 98 10.91 110 70 7 95 6.86 102 71 15 90 14.29 105 72 11 100 9.91 111 73 13 104 11.11 117 74 8 98 7.55 106 75 11 79 12.22 90 76 4 91 4.21 95 77 14 79 15.05 93 78 9 82 9.89 91 79 11 76 12.64 87 80 7 67 9.46 74 81 6 30 16.67 36