/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH01_22_S3_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH01_22_S3_L001_R2_001_val_2.fq.gz
Data processed at 13:43 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
11862
Pairs without alignments under any condition
22771
Pairs that did not map uniquely
5367
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
350298
Methylated C's in CpG context
36949
Methylated C's in CHG context
1595
Methylated C's in CHH context
32057
Methylated C's in Unknown context
383
Unmethylated C's in CpG context
16470
Unmethylated C's in CHG context
67571
Unmethylated C's in CHH context
195656
Unmethylated C's in Unknown context
832
Percentage methylation (CpG context)
69.2%
Percentage methylation (CHG context)
2.3%
Percentage methylation (CHH context)
14.1%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5893
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5969
original bottom strand
Deduplication
Alignments analysed
11862
Unique alignments
9573
Duplicates removed
2289
Duplicated alignments were found at 1728 different positions
