CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 221 97 69.50 318 2 241 85 73.93 326 3 186 97 65.72 283 4 199 96 67.46 295 5 178 95 65.20 273 6 185 97 65.60 282 7 187 79 70.30 266 8 213 95 69.16 308 9 215 95 69.35 310 10 205 88 69.97 293 11 222 81 73.27 303 12 215 84 71.91 299 13 205 81 71.68 286 14 217 93 70.00 310 15 217 87 71.38 304 16 191 92 67.49 283 17 201 80 71.53 281 18 209 86 70.85 295 19 205 85 70.69 290 20 210 85 71.19 295 21 201 77 72.30 278 22 211 87 70.81 298 23 228 90 71.70 318 24 209 100 67.64 309 25 222 92 70.70 314 26 210 84 71.43 294 27 194 80 70.80 274 28 186 86 68.38 272 29 207 82 71.63 289 30 209 85 71.09 294 31 219 90 70.87 309 32 195 77 71.69 272 33 184 82 69.17 266 34 209 94 68.98 303 35 195 86 69.40 281 36 195 73 72.76 268 37 171 73 70.08 244 38 174 72 70.73 246 39 178 76 70.08 254 40 149 62 70.62 211 41 172 77 69.08 249 42 204 74 73.38 278 43 164 71 69.79 235 44 161 73 68.80 234 45 185 70 72.55 255 46 155 72 68.28 227 47 139 61 69.50 200 48 128 72 64.00 200 49 158 61 72.15 219 50 140 57 71.07 197 51 133 61 68.56 194 52 133 61 68.56 194 53 111 62 64.16 173 54 120 58 67.42 178 55 127 55 69.78 182 56 126 51 71.19 177 57 105 73 58.99 178 58 117 48 70.91 165 59 95 55 63.33 150 60 113 45 71.52 158 61 107 52 67.30 159 62 112 47 70.44 159 63 86 58 59.72 144 64 109 43 71.71 152 65 88 37 70.40 125 66 98 37 72.59 135 67 83 45 64.84 128 68 98 53 64.90 151 69 85 36 70.25 121 70 86 35 71.07 121 71 70 36 66.04 106 72 91 34 72.80 125 73 85 41 67.46 126 74 85 39 68.55 124 75 69 29 70.41 98 76 72 37 66.06 109 77 78 40 66.10 118 78 72 36 66.67 108 79 61 35 63.54 96 80 62 27 69.66 89 81 44 20 68.75 64 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 47 328 12.53 375 2 25 326 7.12 351 3 15 349 4.12 364 4 13 321 3.89 334 5 28 323 7.98 351 6 23 345 6.25 368 7 15 325 4.41 340 8 12 357 3.25 369 9 12 380 3.06 392 10 13 333 3.76 346 11 10 336 2.89 346 12 7 362 1.90 369 13 5 369 1.34 374 14 10 348 2.79 358 15 7 357 1.92 364 16 11 326 3.26 337 17 14 360 3.74 374 18 10 349 2.79 359 19 9 379 2.32 388 20 13 386 3.26 399 21 9 382 2.30 391 22 6 381 1.55 387 23 11 327 3.25 338 24 10 365 2.67 375 25 8 332 2.35 340 26 10 376 2.59 386 27 4 376 1.05 380 28 9 356 2.47 365 29 10 371 2.62 381 30 7 371 1.85 378 31 10 317 3.06 327 32 4 353 1.12 357 33 8 359 2.18 367 34 13 331 3.78 344 35 4 324 1.22 328 36 7 314 2.18 321 37 11 329 3.24 340 38 10 295 3.28 305 39 4 291 1.36 295 40 6 287 2.05 293 41 5 309 1.59 314 42 7 287 2.38 294 43 6 279 2.11 285 44 8 290 2.68 298 45 6 245 2.39 251 46 7 265 2.57 272 47 4 267 1.48 271 48 6 265 2.21 271 49 7 244 2.79 251 50 5 235 2.08 240 51 10 247 3.89 257 52 6 219 2.67 225 53 2 265 0.75 267 54 9 240 3.61 249 55 8 235 3.29 243 56 4 191 2.05 195 57 8 217 3.56 225 58 11 194 5.37 205 59 3 211 1.40 214 60 1 192 0.52 193 61 6 179 3.24 185 62 4 192 2.04 196 63 3 195 1.52 198 64 3 165 1.79 168 65 3 161 1.83 164 66 3 165 1.79 168 67 2 174 1.14 176 68 2 151 1.31 153 69 2 138 1.43 140 70 4 146 2.67 150 71 3 130 2.26 133 72 5 148 3.27 153 73 7 153 4.38 160 74 8 115 6.50 123 75 3 128 2.29 131 76 5 121 3.97 126 77 8 129 5.84 137 78 4 136 2.86 140 79 8 110 6.78 118 80 3 98 2.97 101 81 0 93 0.00 93 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 268 888 23.18 1156 2 266 935 22.15 1201 3 253 958 20.89 1211 4 241 991 19.56 1232 5 258 997 20.56 1255 6 255 1039 19.71 1294 7 250 954 20.76 1204 8 234 997 19.01 1231 9 261 963 21.32 1224 10 258 958 21.22 1216 11 231 984 19.01 1215 12 241 1000 19.42 1241 13 279 988 22.02 1267 14 247 1030 19.34 1277 15 271 1013 21.11 1284 16 257 1075 19.29 1332 17 242 1033 18.98 1275 18 271 1074 20.15 1345 19 300 1024 22.66 1324 20 252 1135 18.17 1387 21 260 1029 20.17 1289 22 263 1028 20.37 1291 23 253 1094 18.78 1347 24 256 1048 19.63 1304 25 261 1061 19.74 1322 26 265 1048 20.18 1313 27 262 1092 19.35 1354 28 276 1039 20.99 1315 29 254 1092 18.87 1346 30 277 985 21.95 1262 31 248 1019 19.57 1267 32 253 995 20.27 1248 33 243 957 20.25 1200 34 242 970 19.97 1212 35 232 978 19.17 1210 36 218 949 18.68 1167 37 239 924 20.55 1163 38 226 906 19.96 1132 39 221 897 19.77 1118 40 199 922 17.75 1121 41 202 889 18.52 1091 42 196 844 18.85 1040 43 175 822 17.55 997 44 174 827 17.38 1001 45 175 826 17.48 1001 46 176 753 18.95 929 47 172 799 17.71 971 48 163 785 17.19 948 49 171 728 19.02 899 50 150 702 17.61 852 51 133 719 15.61 852 52 174 719 19.48 893 53 150 670 18.29 820 54 149 658 18.46 807 55 133 652 16.94 785 56 136 653 17.24 789 57 125 627 16.62 752 58 142 613 18.81 755 59 127 610 17.23 737 60 137 584 19.00 721 61 117 574 16.93 691 62 120 552 17.86 672 63 120 575 17.27 695 64 109 548 16.59 657 65 88 540 14.01 628 66 98 544 15.26 642 67 95 484 16.41 579 68 100 499 16.69 599 69 93 478 16.29 571 70 82 441 15.68 523 71 85 453 15.80 538 72 88 457 16.15 545 73 78 427 15.45 505 74 80 420 16.00 500 75 79 400 16.49 479 76 72 384 15.79 456 77 79 387 16.95 466 78 77 348 18.12 425 79 68 339 16.71 407 80 59 291 16.86 350 81 40 231 14.76 271 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 38 32 54.29 70 2 42 25 62.69 67 3 76 36 67.86 112 4 39 36 52.00 75 5 42 26 61.76 68 6 46 24 65.71 70 7 38 20 65.52 58 8 51 16 76.12 67 9 43 32 57.33 75 10 43 30 58.90 73 11 44 19 69.84 63 12 29 27 51.79 56 13 39 19 67.24 58 14 37 17 68.52 54 15 33 22 60.00 55 16 34 18 65.38 52 17 33 25 56.90 58 18 21 12 63.64 33 19 30 17 63.83 47 20 31 13 70.45 44 21 26 14 65.00 40 22 25 17 59.52 42 23 26 17 60.47 43 24 21 20 51.22 41 25 16 14 53.33 30 26 27 14 65.85 41 27 28 13 68.29 41 28 21 10 67.74 31 29 17 9 65.38 26 30 17 13 56.67 30 31 19 12 61.29 31 32 17 12 58.62 29 33 13 14 48.15 27 34 13 8 61.90 21 35 14 13 51.85 27 36 19 11 63.33 30 37 9 6 60.00 15 38 9 11 45.00 20 39 15 7 68.18 22 40 12 6 66.67 18 41 8 4 66.67 12 42 12 9 57.14 21 43 8 3 72.73 11 44 8 4 66.67 12 45 13 8 61.90 21 46 11 7 61.11 18 47 14 8 63.64 22 48 9 7 56.25 16 49 8 6 57.14 14 50 10 4 71.43 14 51 8 4 66.67 12 52 3 8 27.27 11 53 3 3 50.00 6 54 7 2 77.78 9 55 7 1 87.50 8 56 4 7 36.36 11 57 6 3 66.67 9 58 2 3 40.00 5 59 9 4 69.23 13 60 7 4 63.64 11 61 1 6 14.29 7 62 7 3 70.00 10 63 3 1 75.00 4 64 5 0 100.00 5 65 4 4 50.00 8 66 4 3 57.14 7 67 4 2 66.67 6 68 3 2 60.00 5 69 3 1 75.00 4 70 7 0 100.00 7 71 5 3 62.50 8 72 2 3 40.00 5 73 4 1 80.00 5 74 6 5 54.55 11 75 1 2 33.33 3 76 5 2 71.43 7 77 4 1 80.00 5 78 2 1 66.67 3 79 5 3 62.50 8 80 2 0 100.00 2 81 1 0 100.00 1 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 5 96 4.95 101 2 5 86 5.49 91 3 17 104 14.05 121 4 1 142 0.70 143 5 3 80 3.61 83 6 1 98 1.01 99 7 3 76 3.80 79 8 2 95 2.06 97 9 4 91 4.21 95 10 1 83 1.19 84 11 2 85 2.30 87 12 4 80 4.76 84 13 1 77 1.28 78 14 1 68 1.45 69 15 1 63 1.56 64 16 2 49 3.92 51 17 5 76 6.17 81 18 0 46 0.00 46 19 2 50 3.85 52 20 1 50 1.96 51 21 0 61 0.00 61 22 1 36 2.70 37 23 1 42 2.33 43 24 2 47 4.08 49 25 1 45 2.17 46 26 0 38 0.00 38 27 1 38 2.56 39 28 0 31 0.00 31 29 2 39 4.88 41 30 2 39 4.88 41 31 0 36 0.00 36 32 2 34 5.56 36 33 4 43 8.51 47 34 0 22 0.00 22 35 0 32 0.00 32 36 0 41 0.00 41 37 1 27 3.57 28 38 0 29 0.00 29 39 0 29 0.00 29 40 0 23 0.00 23 41 2 26 7.14 28 42 0 25 0.00 25 43 0 24 0.00 24 44 0 20 0.00 20 45 0 24 0.00 24 46 0 25 0.00 25 47 2 17 10.53 19 48 0 20 0.00 20 49 0 20 0.00 20 50 1 17 5.56 18 51 1 17 5.56 18 52 0 18 0.00 18 53 0 12 0.00 12 54 0 15 0.00 15 55 0 13 0.00 13 56 0 13 0.00 13 57 0 14 0.00 14 58 1 13 7.14 14 59 0 11 0.00 11 60 0 10 0.00 10 61 0 12 0.00 12 62 0 4 0.00 4 63 1 10 9.09 11 64 0 13 0.00 13 65 0 8 0.00 8 66 0 10 0.00 10 67 1 8 11.11 9 68 1 5 16.67 6 69 1 7 12.50 8 70 0 4 0.00 4 71 0 7 0.00 7 72 0 7 0.00 7 73 0 4 0.00 4 74 0 8 0.00 8 75 0 8 0.00 8 76 0 5 0.00 5 77 1 5 16.67 6 78 2 7 22.22 9 79 0 2 0.00 2 80 0 7 0.00 7 81 0 1 0.00 1 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 89 346 20.46 435 2 41 349 10.51 390 3 97 294 24.81 391 4 36 278 11.46 314 5 79 236 25.08 315 6 36 265 11.96 301 7 82 243 25.23 325 8 42 238 15.00 280 9 78 257 23.28 335 10 35 246 12.46 281 11 75 250 23.08 325 12 41 275 12.97 316 13 74 250 22.84 324 14 33 247 11.79 280 15 58 246 19.08 304 16 31 224 12.16 255 17 56 219 20.36 275 18 23 187 10.95 210 19 44 175 20.09 219 20 22 168 11.58 190 21 50 179 21.83 229 22 19 168 10.16 187 23 47 159 22.82 206 24 21 149 12.35 170 25 40 161 19.90 201 26 19 137 12.18 156 27 43 142 23.24 185 28 17 146 10.43 163 29 37 126 22.70 163 30 18 129 12.24 147 31 39 119 24.68 158 32 18 118 13.24 136 33 41 127 24.40 168 34 20 108 15.62 128 35 37 108 25.52 145 36 19 101 15.83 120 37 35 98 26.32 133 38 24 94 20.34 118 39 33 86 27.73 119 40 16 94 14.55 110 41 32 84 27.59 116 42 21 76 21.65 97 43 38 77 33.04 115 44 15 80 15.79 95 45 35 74 32.11 109 46 15 74 16.85 89 47 33 67 33.00 100 48 17 60 22.08 77 49 33 49 40.24 82 50 13 53 19.70 66 51 32 63 33.68 95 52 18 48 27.27 66 53 32 59 35.16 91 54 14 57 19.72 71 55 28 53 34.57 81 56 15 57 20.83 72 57 29 45 39.19 74 58 19 52 26.76 71 59 24 50 32.43 74 60 14 50 21.88 64 61 17 52 24.64 69 62 13 39 25.00 52 63 25 34 42.37 59 64 14 37 27.45 51 65 17 37 31.48 54 66 16 52 23.53 68 67 22 37 37.29 59 68 16 35 31.37 51 69 17 38 30.91 55 70 11 34 24.44 45 71 17 33 34.00 50 72 15 33 31.25 48 73 20 33 37.74 53 74 15 35 30.00 50 75 14 25 35.90 39 76 10 32 23.81 42 77 11 28 28.21 39 78 9 23 28.12 32 79 6 23 20.69 29 80 11 17 39.29 28 81 4 6 40.00 10