/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH01_14_S2_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH01_14_S2_L001_R2_001_val_2.fq.gz
Data processed at 13:43 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
11548
Pairs without alignments under any condition
22152
Pairs that did not map uniquely
6300
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
306759
Methylated C's in CpG context
32725
Methylated C's in CHG context
1594
Methylated C's in CHH context
35464
Methylated C's in Unknown context
457
Unmethylated C's in CpG context
14243
Unmethylated C's in CHG context
56303
Unmethylated C's in CHH context
166430
Unmethylated C's in Unknown context
908
Percentage methylation (CpG context)
69.7%
Percentage methylation (CHG context)
2.8%
Percentage methylation (CHH context)
17.6%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5688
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5860
original bottom strand
Deduplication
Alignments analysed
11548
Unique alignments
9102
Duplicates removed
2446
Duplicated alignments were found at 1736 different positions
