CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 258 78 76.79 336 2 283 79 78.18 362 3 277 86 76.31 363 4 236 73 76.38 309 5 286 86 76.88 372 6 248 93 72.73 341 7 240 79 75.24 319 8 284 102 73.58 386 9 278 76 78.53 354 10 262 86 75.29 348 11 303 85 78.09 388 12 295 91 76.42 386 13 281 94 74.93 375 14 277 97 74.06 374 15 282 84 77.05 366 16 288 88 76.60 376 17 306 84 78.46 390 18 275 84 76.60 359 19 270 105 72.00 375 20 246 92 72.78 338 21 315 86 78.55 401 22 280 89 75.88 369 23 287 90 76.13 377 24 303 100 75.19 403 25 273 80 77.34 353 26 284 71 80.00 355 27 276 81 77.31 357 28 255 79 76.35 334 29 269 93 74.31 362 30 259 90 74.21 349 31 277 82 77.16 359 32 295 85 77.63 380 33 241 88 73.25 329 34 288 84 77.42 372 35 255 88 74.34 343 36 265 76 77.71 341 37 279 70 79.94 349 38 244 83 74.62 327 39 288 94 75.39 382 40 251 68 78.68 319 41 246 67 78.59 313 42 253 94 72.91 347 43 233 71 76.64 304 44 244 84 74.39 328 45 229 62 78.69 291 46 225 72 75.76 297 47 224 88 71.79 312 48 227 75 75.17 302 49 225 68 76.79 293 50 202 64 75.94 266 51 202 51 79.84 253 52 219 47 82.33 266 53 206 58 78.03 264 54 197 72 73.23 269 55 199 55 78.35 254 56 207 74 73.67 281 57 197 49 80.08 246 58 197 59 76.95 256 59 175 59 74.79 234 60 193 67 74.23 260 61 176 59 74.89 235 62 174 44 79.82 218 63 185 47 79.74 232 64 192 61 75.89 253 65 171 45 79.17 216 66 160 45 78.05 205 67 145 50 74.36 195 68 134 52 72.04 186 69 152 50 75.25 202 70 153 46 76.88 199 71 126 43 74.56 169 72 130 60 68.42 190 73 130 42 75.58 172 74 154 43 78.17 197 75 134 54 71.28 188 76 132 41 76.30 173 77 117 53 68.82 170 78 127 44 74.27 171 79 113 26 81.29 139 80 109 32 77.30 141 81 81 28 74.31 109 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 44 411 9.67 455 2 23 417 5.23 440 3 14 380 3.55 394 4 24 417 5.44 441 5 8 445 1.77 453 6 26 401 6.09 427 7 10 412 2.37 422 8 12 478 2.45 490 9 12 413 2.82 425 10 22 420 4.98 442 11 12 414 2.82 426 12 8 426 1.84 434 13 10 417 2.34 427 14 11 425 2.52 436 15 15 444 3.27 459 16 3 435 0.68 438 17 14 446 3.04 460 18 10 456 2.15 466 19 11 423 2.53 434 20 10 445 2.20 455 21 18 460 3.77 478 22 6 442 1.34 448 23 9 428 2.06 437 24 6 441 1.34 447 25 12 423 2.76 435 26 5 425 1.16 430 27 13 408 3.09 421 28 12 437 2.67 449 29 16 441 3.50 457 30 13 434 2.91 447 31 10 395 2.47 405 32 9 389 2.26 398 33 12 422 2.76 434 34 6 441 1.34 447 35 9 402 2.19 411 36 13 412 3.06 425 37 9 404 2.18 413 38 8 357 2.19 365 39 12 392 2.97 404 40 12 408 2.86 420 41 9 401 2.20 410 42 7 372 1.85 379 43 11 356 3.00 367 44 13 335 3.74 348 45 6 302 1.95 308 46 9 336 2.61 345 47 2 339 0.59 341 48 6 326 1.81 332 49 8 286 2.72 294 50 10 328 2.96 338 51 6 357 1.65 363 52 8 337 2.32 345 53 1 319 0.31 320 54 9 286 3.05 295 55 8 311 2.51 319 56 6 271 2.17 277 57 6 320 1.84 326 58 7 279 2.45 286 59 5 280 1.75 285 60 8 279 2.79 287 61 3 248 1.20 251 62 3 274 1.08 277 63 6 253 2.32 259 64 7 260 2.62 267 65 5 251 1.95 256 66 2 226 0.88 228 67 3 247 1.20 250 68 7 248 2.75 255 69 7 245 2.78 252 70 2 210 0.94 212 71 7 222 3.06 229 72 3 191 1.55 194 73 2 236 0.84 238 74 1 210 0.47 211 75 3 220 1.35 223 76 2 194 1.02 196 77 9 200 4.31 209 78 0 179 0.00 179 79 4 171 2.29 175 80 4 189 2.07 193 81 2 125 1.57 127 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 247 1071 18.74 1318 2 211 1105 16.03 1316 3 213 1078 16.50 1291 4 213 1072 16.58 1285 5 207 1083 16.05 1290 6 237 1045 18.49 1282 7 223 1091 16.97 1314 8 206 1068 16.17 1274 9 207 1125 15.54 1332 10 214 1075 16.60 1289 11 204 1082 15.86 1286 12 235 1004 18.97 1239 13 224 1097 16.96 1321 14 255 1077 19.14 1332 15 222 1110 16.67 1332 16 227 1107 17.02 1334 17 217 1148 15.90 1365 18 218 1142 16.03 1360 19 216 1149 15.82 1365 20 226 1204 15.80 1430 21 195 1150 14.50 1345 22 218 1170 15.71 1388 23 249 1080 18.74 1329 24 234 1131 17.14 1365 25 231 1165 16.55 1396 26 195 1193 14.05 1388 27 219 1138 16.14 1357 28 202 1171 14.71 1373 29 220 1156 15.99 1376 30 202 1073 15.84 1275 31 210 1115 15.85 1325 32 192 1036 15.64 1228 33 205 1052 16.31 1257 34 210 1102 16.01 1312 35 170 1053 13.90 1223 36 162 1067 13.18 1229 37 166 1094 13.17 1260 38 160 1039 13.34 1199 39 176 1030 14.59 1206 40 148 1005 12.84 1153 41 172 999 14.69 1171 42 153 1009 13.17 1162 43 141 928 13.19 1069 44 151 969 13.48 1120 45 138 949 12.70 1087 46 127 974 11.53 1101 47 146 937 13.48 1083 48 130 954 11.99 1084 49 137 955 12.55 1092 50 122 934 11.55 1056 51 120 927 11.46 1047 52 118 886 11.75 1004 53 125 901 12.18 1026 54 121 845 12.53 966 55 130 820 13.68 950 56 112 784 12.50 896 57 93 843 9.94 936 58 109 844 11.44 953 59 119 768 13.42 887 60 92 783 10.51 875 61 112 770 12.70 882 62 86 757 10.20 843 63 89 726 10.92 815 64 84 718 10.47 802 65 93 750 11.03 843 66 92 712 11.44 804 67 97 675 12.56 772 68 85 680 11.11 765 69 76 667 10.23 743 70 67 641 9.46 708 71 78 624 11.11 702 72 66 648 9.24 714 73 64 607 9.54 671 74 93 605 13.32 698 75 65 586 9.98 651 76 65 579 10.09 644 77 53 551 8.77 604 78 62 566 9.87 628 79 61 519 10.52 580 80 58 479 10.80 537 81 38 384 9.00 422 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 63 41 60.58 104 2 98 41 70.50 139 3 93 42 68.89 135 4 84 43 66.14 127 5 84 37 69.42 121 6 80 35 69.57 115 7 96 31 75.59 127 8 98 39 71.53 137 9 82 41 66.67 123 10 79 33 70.54 112 11 83 40 67.48 123 12 75 29 72.12 104 13 98 31 75.97 129 14 72 33 68.57 105 15 59 29 67.05 88 16 75 22 77.32 97 17 55 34 61.80 89 18 70 22 76.09 92 19 67 30 69.07 97 20 56 29 65.88 85 21 56 27 67.47 83 22 58 25 69.88 83 23 54 19 73.97 73 24 49 20 71.01 69 25 74 23 76.29 97 26 56 20 73.68 76 27 48 20 70.59 68 28 68 15 81.93 83 29 60 24 71.43 84 30 43 15 74.14 58 31 58 21 73.42 79 32 45 19 70.31 64 33 57 22 72.15 79 34 40 22 64.52 62 35 40 14 74.07 54 36 44 15 74.58 59 37 36 12 75.00 48 38 40 15 72.73 55 39 29 14 67.44 43 40 45 10 81.82 55 41 42 17 71.19 59 42 31 12 72.09 43 43 35 11 76.09 46 44 38 16 70.37 54 45 20 9 68.97 29 46 22 11 66.67 33 47 28 10 73.68 38 48 31 13 70.45 44 49 29 9 76.32 38 50 18 8 69.23 26 51 21 10 67.74 31 52 24 12 66.67 36 53 19 8 70.37 27 54 32 6 84.21 38 55 20 10 66.67 30 56 19 8 70.37 27 57 15 5 75.00 20 58 19 7 73.08 26 59 24 9 72.73 33 60 24 11 68.57 35 61 20 10 66.67 30 62 14 9 60.87 23 63 27 12 69.23 39 64 21 5 80.77 26 65 14 4 77.78 18 66 22 5 81.48 27 67 15 4 78.95 19 68 21 6 77.78 27 69 13 4 76.47 17 70 16 5 76.19 21 71 15 3 83.33 18 72 22 5 81.48 27 73 8 5 61.54 13 74 15 8 65.22 23 75 12 3 80.00 15 76 10 5 66.67 15 77 11 2 84.62 13 78 13 4 76.47 17 79 15 3 83.33 18 80 8 2 80.00 10 81 8 1 88.89 9 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 6 178 3.26 184 2 9 162 5.26 171 3 11 156 6.59 167 4 0 170 0.00 170 5 3 163 1.81 166 6 2 138 1.43 140 7 4 130 2.99 134 8 4 180 2.17 184 9 1 150 0.66 151 10 4 142 2.74 146 11 3 137 2.14 140 12 3 137 2.14 140 13 1 152 0.65 153 14 4 141 2.76 145 15 2 145 1.36 147 16 3 127 2.31 130 17 2 133 1.48 135 18 2 123 1.60 125 19 4 114 3.39 118 20 1 103 0.96 104 21 0 103 0.00 103 22 3 79 3.66 82 23 2 111 1.77 113 24 2 101 1.94 103 25 2 95 2.06 97 26 2 108 1.82 110 27 1 92 1.08 93 28 1 83 1.19 84 29 1 104 0.95 105 30 3 79 3.66 82 31 3 70 4.11 73 32 0 93 0.00 93 33 1 78 1.27 79 34 3 67 4.29 70 35 2 66 2.94 68 36 0 71 0.00 71 37 1 80 1.23 81 38 1 56 1.75 57 39 1 67 1.47 68 40 1 52 1.89 53 41 0 43 0.00 43 42 0 63 0.00 63 43 0 43 0.00 43 44 1 51 1.92 52 45 2 65 2.99 67 46 1 56 1.75 57 47 0 41 0.00 41 48 1 52 1.89 53 49 0 41 0.00 41 50 2 53 3.64 55 51 0 42 0.00 42 52 1 39 2.50 40 53 0 37 0.00 37 54 1 39 2.50 40 55 1 37 2.63 38 56 1 43 2.27 44 57 0 44 0.00 44 58 0 36 0.00 36 59 1 31 3.12 32 60 1 36 2.70 37 61 1 44 2.22 45 62 0 39 0.00 39 63 1 31 3.12 32 64 1 33 2.94 34 65 1 25 3.85 26 66 1 32 3.03 33 67 2 19 9.52 21 68 0 32 0.00 32 69 0 36 0.00 36 70 1 25 3.85 26 71 1 25 3.85 26 72 1 29 3.33 30 73 0 16 0.00 16 74 1 21 4.55 22 75 0 19 0.00 19 76 0 18 0.00 18 77 0 20 0.00 20 78 0 11 0.00 11 79 0 17 0.00 17 80 1 19 5.00 20 81 0 12 0.00 12 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 71 508 12.26 579 2 29 507 5.41 536 3 71 503 12.37 574 4 33 457 6.73 490 5 63 449 12.30 512 6 30 417 6.71 447 7 62 430 12.60 492 8 36 442 7.53 478 9 58 391 12.92 449 10 34 423 7.44 457 11 68 373 15.42 441 12 28 383 6.81 411 13 63 389 13.94 452 14 28 354 7.33 382 15 61 378 13.90 439 16 33 383 7.93 416 17 52 340 13.27 392 18 24 356 6.32 380 19 47 334 12.34 381 20 31 316 8.93 347 21 47 311 13.13 358 22 28 299 8.56 327 23 34 284 10.69 318 24 26 285 8.36 311 25 40 274 12.74 314 26 31 246 11.19 277 27 46 257 15.18 303 28 20 234 7.87 254 29 36 259 12.20 295 30 23 253 8.33 276 31 44 260 14.47 304 32 22 214 9.32 236 33 35 226 13.41 261 34 21 229 8.40 250 35 40 187 17.62 227 36 26 188 12.15 214 37 36 217 14.23 253 38 18 184 8.91 202 39 37 211 14.92 248 40 18 196 8.41 214 41 26 184 12.38 210 42 16 175 8.38 191 43 30 167 15.23 197 44 12 168 6.67 180 45 26 173 13.07 199 46 14 182 7.14 196 47 26 158 14.13 184 48 13 151 7.93 164 49 29 172 14.43 201 50 12 136 8.11 148 51 28 136 17.07 164 52 17 129 11.64 146 53 24 119 16.78 143 54 10 121 7.63 131 55 23 116 16.55 139 56 18 125 12.59 143 57 22 122 15.28 144 58 18 118 13.24 136 59 17 119 12.50 136 60 10 103 8.85 113 61 18 106 14.52 124 62 12 97 11.01 109 63 18 100 15.25 118 64 15 92 14.02 107 65 18 90 16.67 108 66 11 103 9.65 114 67 15 89 14.42 104 68 12 89 11.88 101 69 14 84 14.29 98 70 11 89 11.00 100 71 13 84 13.40 97 72 11 77 12.50 88 73 13 73 15.12 86 74 12 67 15.19 79 75 14 74 15.91 88 76 14 63 18.18 77 77 13 61 17.57 74 78 13 61 17.57 74 79 12 64 15.79 76 80 11 56 16.42 67 81 6 20 23.08 26