/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH01_06_S1_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH01_06_S1_L001_R2_001_val_2.fq.gz
Data processed at 13:43 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
11805
Pairs without alignments under any condition
23284
Pairs that did not map uniquely
4911
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
353081
Methylated C's in CpG context
45441
Methylated C's in CHG context
1887
Methylated C's in CHH context
29260
Methylated C's in Unknown context
304
Unmethylated C's in CpG context
14595
Unmethylated C's in CHG context
70652
Unmethylated C's in CHH context
191246
Unmethylated C's in Unknown context
718
Percentage methylation (CpG context)
75.7%
Percentage methylation (CHG context)
2.6%
Percentage methylation (CHH context)
13.3%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5871
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5934
original bottom strand
Deduplication
Alignments analysed
11805
Unique alignments
9520
Duplicates removed
2285
Duplicated alignments were found at 1723 different positions
