Alignment Stats
| Sequence pairs analysed in total |
73776588 |
| Paired-end alignments with a unique best hit |
45591578 |
| Pairs without alignments under any condition |
16002262 |
| Pairs that did not map uniquely |
12182748 |
| Genomic sequence context not extractable (edges of chromosomes) |
120 |
|
|
Cytosine Methylation
| Total C's analysed |
1595529090 |
| Methylated C's in CpG context |
21006842 |
| Methylated C's in CHG context |
1277934 |
| Methylated C's in CHH context |
5350483 |
| Methylated C's in Unknown context |
49317 |
| Unmethylated C's in CpG context |
188873033 |
| Unmethylated C's in CHG context |
281019136 |
| Unmethylated C's in CHH context |
1098001662 |
| Unmethylated C's in Unknown context |
3841672 |
| Percentage methylation (CpG context) |
10.0% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
11364394 |
original top strand |
| CTOT |
11385517 |
complementary to original top strand |
| CTOB |
11430000 |
complementary to original bottom strand |
| OB |
11411547 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
45591458 |
| Unique alignments |
37592253 |
| Duplicates removed |
7999205 |
| Duplicated alignments were found at 6741104 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
903220750 |
| Methylated C's in CpG context |
11490959 |
| Methylated C's in CHG context |
711903 |
| Methylated C's in CHH context |
3019557 |
| Unmethylated C's in CpG context |
105465948 |
| Unmethylated C's in CHG context |
157214343 |
| Unmethylated C's in CHH context |
625318040 |
| Percentage methylation (CpG context) |
9.8% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
