Alignment Stats
| Sequence pairs analysed in total |
66080050 |
| Paired-end alignments with a unique best hit |
40370046 |
| Pairs without alignments under any condition |
15234187 |
| Pairs that did not map uniquely |
10475817 |
| Genomic sequence context not extractable (edges of chromosomes) |
110 |
|
|
Cytosine Methylation
| Total C's analysed |
1403343205 |
| Methylated C's in CpG context |
18233544 |
| Methylated C's in CHG context |
1194392 |
| Methylated C's in CHH context |
5127016 |
| Methylated C's in Unknown context |
46389 |
| Unmethylated C's in CpG context |
161678658 |
| Unmethylated C's in CHG context |
242953310 |
| Unmethylated C's in CHH context |
974156285 |
| Unmethylated C's in Unknown context |
3481561 |
| Percentage methylation (CpG context) |
10.1% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
10080295 |
original top strand |
| CTOT |
10080848 |
complementary to original top strand |
| CTOB |
10101750 |
complementary to original bottom strand |
| OB |
10107043 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
40369936 |
| Unique alignments |
33703944 |
| Duplicates removed |
6665992 |
| Duplicated alignments were found at 5688018 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
815274441 |
| Methylated C's in CpG context |
10242157 |
| Methylated C's in CHG context |
682349 |
| Methylated C's in CHH context |
2962714 |
| Unmethylated C's in CpG context |
93016354 |
| Unmethylated C's in CHG context |
139619354 |
| Unmethylated C's in CHH context |
568751513 |
| Percentage methylation (CpG context) |
9.9% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
